WormBase Tree Display for Variation: WBVar00093141

WBVar00093141 Name: Public_name: ok1946
    HGVSg: CHROMOSOME_V:g.7539485_7540905del
  Sequence_details: SMap: S_parent: Sequence: C54F6
    Flanking_sequences: taacttccatgtttggtgtatggttttaga ttctcgtctattatgtctttatgatctcca
    Mapping_target: C54F6
    Type_of_mutation: Deletion
    PCR_product: ok1946_external
      ok1946_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032283
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00005474
      WBGene00003731
    Transcript: C54F6.13a.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2067-?
        Exon_number: 11/11
      C54F6.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 171-?
        CDS_position: 171-?
        Protein_position: 57-?
        Intron_number: 1-3/3
        Exon_number: 1-4/4
      C54F6.13b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2206-?
        Exon_number: 12/12
      C54F6.13a.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 2119-?
        Exon_number: 12/12
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele