WormBase Tree Display for Variation: WBVar00093152
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| WBVar00093152 | Name | Public_name | ok1957 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Other_name | C45E1.1a.1:c.417-20_862-92del | ||||||||
| C45E1.1c.1:c.435-20_880-92del | |||||||||
| C45E1.1b.1:c.342-20_787-92del | |||||||||
| C45E1.1a.2:c.417-20_862-92del | |||||||||
| HGVSg | CHROMOSOME_I:g.3107835_3109182del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | C45E1 | |||||
| Flanking_sequences | aatcactaccttatgaaggtcgaatgagca | aaatcaatttcgaactcagttttcaaattc | |||||||
| Mapping_target | C45E1 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| PCR_product | ok1957_external | ||||||||
| ok1957_internal | |||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00032288 | ||||||||
| Laboratory | RB | ||||||||
| Person | WBPerson46 | ||||||||
| KO_consortium_allele | |||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00003654 | |||||||
| Transcript | C45E1.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | C45E1.1b.1:c.342-20_787-92del | ||||||||
| Intron_number | 2-6/6 | ||||||||
| Exon_number | 3-6/7 | ||||||||
| C45E1.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | C45E1.1c.1:c.435-20_880-92del | ||||||||
| Intron_number | 4-8/8 | ||||||||
| Exon_number | 5-8/9 | ||||||||
| C45E1.1a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | C45E1.1a.2:c.417-20_862-92del | ||||||||
| Intron_number | 5-9/10 | ||||||||
| Exon_number | 6-9/11 | ||||||||
| C45E1.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | C45E1.1a.1:c.417-20_862-92del | ||||||||
| Intron_number | 4-8/9 | ||||||||
| Exon_number | 5-8/10 | ||||||||
| Isolation | Mutagen | EMS | |||||||
| Description | Phenotype_not_observed | WBPhenotype:0000068 | Paper_evidence | WBPaper00044077 | |||||
| Curator_confirmed | WBPerson3947 | ||||||||
| EQ_annotations | GO_term | GO:0034599 | PATO:0000460 | Paper_evidence | WBPaper00044077 | ||||
| Curator_confirmed | WBPerson3947 | ||||||||
| WBPhenotype:0001621 | Paper_evidence | WBPaper00044077 | |||||||
| Curator_confirmed | WBPerson3947 | ||||||||
| EQ_annotations | GO_term | GO:0006979 | PATO:0000460 | Paper_evidence | WBPaper00044077 | ||||
| Curator_confirmed | WBPerson3947 | ||||||||
| WBPhenotype:0001663 | Paper_evidence | WBPaper00044077 | |||||||
| Curator_confirmed | WBPerson3947 | ||||||||
| EQ_annotations | GO_term | GO:0006979 | PATO:0000460 | Paper_evidence | WBPaper00044077 | ||||
| Curator_confirmed | WBPerson3947 | ||||||||
| WBPhenotype:0002218 | Paper_evidence | WBPaper00044077 | |||||||
| Curator_confirmed | WBPerson3947 | ||||||||
| Affected_by | Molecule | WBMol:00004596 | Paper_evidence | WBPaper00044077 | |||||
| Curator_confirmed | WBPerson3947 | ||||||||
| Reference | WBPaper00044077 | ||||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
| Method | KO_consortium_allele |
