WormBase Tree Display for Variation: WBVar00093177

WBVar00093177 Name: Public_name: ok1983
    Other_name: CE30998:p.Ala252TrpfsTer7
      F52C9.8a.4:c.754_2032del
      F52C9.8c.1:c.285+852_286-1395del
      F52C9.8a.2:c.754_2032del
      F52C9.8g.1:c.285+852_286-1395del
      F52C9.8a.3:c.754_2032del
      CE30802:p.Ala252TrpfsTer7
      F52C9.8b.1:c.754_2032del
      F52C9.8a.1:c.754_2032del
    HGVSg: CHROMOSOME_III:g.5312989_5314318del
  Sequence_details: SMap: S_parent: Sequence: F52C9
    Flanking_sequences: ACATACTGGAGCTGCTCCTGCTTCTCGAATG tggcgccgaatacgattttgattagcgcga
    Mapping_target: F52C9
    Type_of_mutation: Deletion
    PCR_product: OK1983_external
      OK1983_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032306
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004095
    Transcript: F52C9.8a.3 (11)
      F52C9.8a.2 (11)
      F52C9.8a.4 (11)
      F52C9.8c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F52C9.8c.1:c.285+852_286-1395del
        Intron_number: 5/11
      F52C9.8g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: F52C9.8g.1:c.285+852_286-1395del
        Intron_number: 5/11
      F52C9.8a.1 (11)
      F52C9.8b.1 (11)
    Interactor: WBInteraction000520945
      WBInteraction000571535
      WBInteraction000571536
      WBInteraction000571537
      WBInteraction000571538
      WBInteraction000571539
      WBInteraction000571540
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0001276 Paper_evidence: WBPaper00044613
        Curator_confirmed: WBPerson24243
        Remark: VC1, VC2, VC3, and VC6 express the VC4/5-specific gene unc-4. uIs45 [unc-4p::MDM2::GFP] was used as the reporter for unc-4 expression. Paper_evidence: WBPaper00044613
            Curator_confirmed: WBPerson24243
        EQ_annotations: Anatomy_term: WBbt:0004621 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004619 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004618 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004611 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
        Phenotype_assay: Genotype: uIs45 [unc-4p::MDM2::GFP] Paper_evidence: WBPaper00044613
              Curator_confirmed: WBPerson24243
      WBPhenotype:0001510 Paper_evidence: WBPaper00044613
        Curator_confirmed: WBPerson24243
        Remark: VC1, VC2, VC3, and VC6 express the VC4/5-specific gene unc-4. uIs45 [unc-4p::MDM2::GFP] was used as the reporter for unc-4 expression. Paper_evidence: WBPaper00044613
            Curator_confirmed: WBPerson24243
        EQ_annotations: Anatomy_term: WBbt:0004621 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004619 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004618 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
            WBbt:0004611 PATO:0000460 Paper_evidence: WBPaper00044613
                Curator_confirmed: WBPerson24243
        Phenotype_assay: Genotype: uIs45 [unc-4p::MDM2::GFP] Paper_evidence: WBPaper00044613
              Curator_confirmed: WBPerson24243
  Reference: WBPaper00044613
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele