WormBase Tree Display for Variation: WBVar00093210

WBVar00093210 Evidence: Paper_evidence: WBPaper00038487
  Name: Public_name: ok2020
    Other_name: Y92C3B.3a.2:c.80_*813del
      Y92C3B.3b.2:c.161_*813del
    HGVSg: CHROMOSOME_III:g.1078869_1080184del
  Sequence_details: SMap: S_parent: Sequence: Y92C3B
    Flanking_sequences: ggcaattttaagccaaaattggtatttttg ccattgaagttacgcggaaatccacgccta
    Mapping_target: Y92C3B
    Type_of_mutation: Deletion
    PCR_product: OK2020_external
      OK2020_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032332
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004277
    Transcript: Y92C3B.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 161-?
        CDS_position: 161-?
        Protein_position: 54-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      Y92C3B.3b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,stop_lost,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y92C3B.3b.2:c.161_*813del
        cDNA_position: 302-1566
        CDS_position: 161-?
        Protein_position: 54-?
        Intron_number: 4/5
        Exon_number: 4-6/6
      Y92C3B.3a.2 VEP_consequence: stop_lost,3_prime_UTR_variant
        VEP_impact: HIGH
        HGVSc: Y92C3B.3a.2:c.80_*813del
        cDNA_position: 163-1478
        CDS_position: 80-?
        Protein_position: 27-?
        Exon_number: 4-5/5
      Y92C3B.3a.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 84-?
        CDS_position: 80-?
        Protein_position: 27-?
        Exon_number: 3/3
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000031 Paper_evidence: WBPaper00058991
        Curator_confirmed: WBPerson712
        Image: WBPicture0000014942 Paper_evidence: WBPaper00058991
            Curator_confirmed: WBPerson712
      WBPhenotype:0001183 Paper_evidence: WBPaper00058991
        Curator_confirmed: WBPerson712
        Image: WBPicture0000014942 Paper_evidence: WBPaper00058991
            Curator_confirmed: WBPerson712
      WBPhenotype:0004027 Paper_evidence: WBPaper00038487
        Curator_confirmed: WBPerson712
        Remark: Animals exhibit a higher probability of escape responses (reversal) compared to N2 animals upon an initial plate tap. Paper_evidence: WBPaper00038487
            Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Paper_evidence: WBPaper00058991
        Curator_confirmed: WBPerson712
        Image: WBPicture0000014942 Paper_evidence: WBPaper00058991
            Curator_confirmed: WBPerson712
      WBPhenotype:0000145 Paper_evidence: WBPaper00058991
        Curator_confirmed: WBPerson712
        Image: WBPicture0000014942 Paper_evidence: WBPaper00058991
            Curator_confirmed: WBPerson712
      WBPhenotype:0002469 Paper_evidence: WBPaper00038487
        Curator_confirmed: WBPerson712
        Remark: The probability and size of response to plate taps decreased with continued taps applied with a 10s interval, similar to the response of N2 animals. Paper_evidence: WBPaper00038487
            Curator_confirmed: WBPerson712
  Reference: WBPaper00038487
    WBPaper00058991
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele