WormBase Tree Display for Variation: WBVar00093261
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| WBVar00093261 | Name | Public_name | ok2074 | ||
|---|---|---|---|---|---|
| Other_name | K08E7.5a.1:c.911_2208delinsATGGTTCAAATATG | ||||
| K08E7.5d.1:c.430+906_431-290delinsATGGTTCAAATATG | |||||
| K08E7.5b.1:c.430+906_431-706delinsATGGTTCAAATATG | |||||
| K08E7.5c.1:c.431-579_1083delinsATGGTTCAAATATG | |||||
| CE49840:p.Arg304_Ile736delinsHisGlySerAsnMet | |||||
| K08E7.5e.1:c.430+906_570delinsATGGTTCAAATATG | |||||
| HGVSg | CHROMOSOME_IV:g.12574899_12576196delinsATGGTTCAAATATG | ||||
| Sequence_details | SMap | S_parent | Sequence | K08E7 | |
| Flanking_sequences | caggtacaaagccaagctcttcagcttcac | ccacgtagcattgagcccagcaattcgaaa | |||
| Mapping_target | K08E7 | ||||
| Type_of_mutation | Insertion | ATGGTTCAAATATG | |||
| Deletion | |||||
| PCR_product | OK2074_external | ||||
| OK2074_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032363 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010673 | |||
| Transcript | K08E7.5e.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | K08E7.5e.1:c.430+906_570delinsATGGTTCAAATATG | ||||
| cDNA_position | ?-583 | ||||
| CDS_position | ?-570 | ||||
| Protein_position | ?-190 | ||||
| Intron_number | 3/15 | ||||
| Exon_number | 4/16 | ||||
| K08E7.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K08E7.5d.1:c.430+906_431-290delinsATGGTTCAAATATG | ||||
| Intron_number | 3/15 | ||||
| K08E7.5a.1 | VEP_consequence | protein_altering_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | K08E7.5a.1:c.911_2208delinsATGGTTCAAATATG | ||||
| HGVSp | CE49840:p.Arg304_Ile736delinsHisGlySerAsnMet | ||||
| cDNA_position | 924-2221 | ||||
| CDS_position | 911-2208 | ||||
| Protein_position | 304-736 | ||||
| Exon_number | 5/17 | ||||
| Codon_change | cGTGGTTCAAATATGGCAGGTAACCCCACAGCACCGCTCACCACCACTCAGCACACTTTTGCACCAAACAGCACTGAAACATCAAGATCTTCTACTAGCAGAGGAAAGGCTCCTGGGACCGAACCTAAGTCTGAAGCTCGGTATAGCTCTCAGAATCCTTACTCAGACAACTCGAGCACCCAGAAGCCAGAATACGAATCTGGATACCCAGCGGTGTCTGGAGCAAACTCAAGAGCCCAAATTCCTAATATCACGGACTACACTAAACCATCAGCAGTGTCAATTGAATACGCATCAAGCTCGAAGGAAAGGTCTGATCCTCCATTTTCAACACCCTTAACATCTAATTCACAACATGTACTTACACAGCCAAGGCCAAGGGATTATGAAGATGGCCCGCAGGAGACAACTCGGACAAAAGCTAGTGGCACAAAATCACCTAACTCACTCCAAGCACCTCAACAAACTGCAGCACATCTCATGAAAAATGCCAGAGCACCTGGTCCGGAGCCAAGTCTTCACAGCACTACCACTCACCACGTACAAACACCAATTATCACCATAGCACCCAAGTTTTCAGAACCATCACCATATGCAGAAAATATTATGCTTACACCAAAGCAGGCACCTGGCACCGAACCTCGGTCTAACTCTCAGAACCCTCAAACAGATCGGTTAGCCTCCCAATCAGGATATGAATCCGGCGGGCCTGGACGTCCACAAAATGTTTCAATAAGACACCGAGAGAATCCAAAGGGATCTGATGCAATTTCAAGAACCGCTATTACTCCTTCTAAGATTGATTACTTTGCACCATCGTCACCAACAGGGCCAATTGGATATGAACGTCAAGTCCCGAGTTTCAAGGAAGGACCAGATCATCAATATACAAAATACTCCACGCTCAATTCACCACCTGCACCATCACCACAAGAGTCAAGCACAATCACTCACCATGTCTCCACATCACCCGACTTTTTAGAGCCATCATCAGAAAGTTCTGTGCTCTTACCGAAGCAAGCACCCGGCACCAATCCGAGCACGTCTAATAGTCCACCTGGATATTCTGAACTAATTGGCCCCTCTGGTCCCGGTAATGGTCTACCTGAAGCACCCAGTCACGCCGCACAAAACATTCCCAGAGCACACACGTTTTCAGAGTCACAAGGGTACGAACCGATGGGAAACAATGGGCCAAGTATCTTTGAGGGTCCTGGAACAGAATCTGGATATTCTGAGCCTAAAGCTCTTAGTACTGCGTCACAAAAGACTAAACCAGATGACAAGCCATACGAAATA/cATGGTTCAAATATG | ||||
| Amino_acid_change | RGSNMAGNPTAPLTTTQHTFAPNSTETSRSSTSRGKAPGTEPKSEARYSSQNPYSDNSSTQKPEYESGYPAVSGANSRAQIPNITDYTKPSAVSIEYASSSKERSDPPFSTPLTSNSQHVLTQPRPRDYEDGPQETTRTKASGTKSPNSLQAPQQTAAHLMKNARAPGPEPSLHSTTTHHVQTPIITIAPKFSEPSPYAENIMLTPKQAPGTEPRSNSQNPQTDRLASQSGYESGGPGRPQNVSIRHRENPKGSDAISRTAITPSKIDYFAPSSPTGPIGYERQVPSFKEGPDHQYTKYSTLNSPPAPSPQESSTITHHVSTSPDFLEPSSESSVLLPKQAPGTNPSTSNSPPGYSELIGPSGPGNGLPEAPSHAAQNIPRAHTFSESQGYEPMGNNGPSIFEGPGTESGYSEPKALSTASQKTKPDDKPYEI/HGSNM | ||||
| K08E7.5c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | K08E7.5c.1:c.431-579_1083delinsATGGTTCAAATATG | ||||
| cDNA_position | ?-1094 | ||||
| CDS_position | ?-1083 | ||||
| Protein_position | ?-361 | ||||
| Intron_number | 3-4/15 | ||||
| Exon_number | 4-5/16 | ||||
| K08E7.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K08E7.5b.1:c.430+906_431-706delinsATGGTTCAAATATG | ||||
| Intron_number | 3/13 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
