WormBase Tree Display for Variation: WBVar00093269
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| WBVar00093269 | Name | Public_name | ok2084 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_II:g.6489051_6490543del | ||||
| Sequence_details | SMap | S_parent | Sequence | T28D9 | |
| Flanking_sequences | agtataggacgttcgatactcaaatttgct | cgtgatcgcaaacgttctcgcagatcccgt | |||
| Mapping_target | T28D9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2084_external | ||||
| ok2084_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037033 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004916 | |||
| WBGene00004702 | |||||
| Transcript | T28D9.2b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-328 | ||||
| CDS_position | ?-324 | ||||
| Protein_position | ?-108 | ||||
| Intron_number | 2/5 | ||||
| Exon_number | 1-3/6 | ||||
| T28D9.2b.4 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-325 | ||||
| CDS_position | ?-324 | ||||
| Protein_position | ?-108 | ||||
| Intron_number | 2/5 | ||||
| Exon_number | 1-3/6 | ||||
| T28D9.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-328 | ||||
| CDS_position | ?-324 | ||||
| Protein_position | ?-108 | ||||
| Intron_number | 2/5 | ||||
| Exon_number | 1-3/6 | ||||
| T28D9.2b.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-327 | ||||
| CDS_position | ?-324 | ||||
| Protein_position | ?-108 | ||||
| Intron_number | 2/4 | ||||
| Exon_number | 1-3/5 | ||||
| T28D9.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-328 | ||||
| CDS_position | ?-324 | ||||
| Protein_position | ?-108 | ||||
| Intron_number | 2/6 | ||||
| Exon_number | 1-3/7 | ||||
| T28D9.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-310 | ||||
| Intron_number | 1-2/3 | ||||
| Exon_number | 1-4/4 | ||||
| T28D9.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-405 | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 1-6/6 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
