WormBase Tree Display for Variation: WBVar00093308

WBVar00093308 Evidence: Paper_evidence: WBPaper00038341
  Name: Public_name: ok2129
    HGVSg: CHROMOSOME_II:g.8429952_8431717del
  Sequence_details: SMap: S_parent: Sequence: F14E5
    Flanking_sequences: tttttccatcgaaaccacaatttatacttg tttgcaagataagcaggatcgctgagacta
    Mapping_target: F14E5
    Type_of_mutation: Deletion
    PCR_product: ok2129_external
      ok2129_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032397
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00008802
    Transcript: F14E5.4.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 248-?
        CDS_position: 153-?
        Protein_position: 51-?
        Intron_number: 4-10/11
        Exon_number: 4-12/12
      F14E5.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 170-?
        CDS_position: 153-?
        Protein_position: 51-?
        Intron_number: 3-9/10
        Exon_number: 3-11/11
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0002469 Paper_evidence: WBPaper00041802
        Curator_confirmed: WBPerson3192
    Phenotype_not_observed: WBPhenotype:0000047 Paper_evidence: WBPaper00038341
        Curator_confirmed: WBPerson712
        Remark: Endodermal precursors became internalized at the 2E stage, as in wildtype embryos. Paper_evidence: WBPaper00038341
            Curator_confirmed: WBPerson712
  Reference: WBPaper00038341
    WBPaper00041802
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele