WormBase Tree Display for Variation: WBVar00093457

WBVar00093457 Name: Public_name: ok2299
    Other_name: R74.5a.1:c.31-162_561del
      R74.5b.1:c.-77-1278_207del
    HGVSg: CHROMOSOME_III:g.4198707_4200317del
  Sequence_details: SMap: S_parent: Sequence: R74
    Flanking_sequences: tctttcaatctttcatttctaaccgatttc tcaggtaaggaaaatagtgtttcgtgattc
    Mapping_target: R74
    Type_of_mutation: Deletion
    PCR_product: ok2299_external
      ok2299_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037088
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00011279
    Transcript: R74.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R74.5b.1:c.-77-1278_207del
        cDNA_position: ?-327
        CDS_position: ?-207
        Protein_position: ?-69
        Intron_number: 1-3/6
        Exon_number: 2-4/7
      R74.5b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1398
        CDS_position: ?-207
        Protein_position: ?-69
        Intron_number: 2/5
        Exon_number: 1-3/6
      R74.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R74.5a.1:c.31-162_561del
        cDNA_position: ?-574
        CDS_position: ?-561
        Protein_position: ?-187
        Intron_number: 2-4/7
        Exon_number: 3-5/8
      R74.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-486
        CDS_position: ?-486
        Protein_position: ?-162
        Intron_number: 1-2/4
        Exon_number: 1-3/5
      R74.5b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-539
        CDS_position: ?-207
        Protein_position: ?-69
        Intron_number: 1-3/6
        Exon_number: 1-4/7
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele