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WormBase Tree Display for Variation: WBVar00093470

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Name Class

WBVar00093470NamePublic_nameok2315
Other_nameT19E7.2a.1:c.130-148_693+229del
HGVSgCHROMOSOME_IV:g.5654954_5656056del
Sequence_detailsSMapS_parentSequenceT19E7
Flanking_sequencestttttgtatgtaaattgccaatgccataatctcatagggtcgagagaaaatgagagagag
Mapping_targetT19E7
Type_of_mutationDeletion
PCR_productok2315_external
ok2315_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00036863
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00020585
WBGene00004804
TranscriptT19E7.1.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position577-?
Exon_number5/5
T19E7.2a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScT19E7.2a.1:c.130-148_693+229del
Intron_number1-3/8
Exon_number2-3/9
T19E7.2c.1VEP_consequencesplice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number1/5
Exon_number1/6
InteractorWBInteraction000537507
IsolationMutagenEMS
DescriptionPhenotype_not_observedWBPhenotype:0002423Paper_evidenceWBPaper00049307
Curator_confirmedWBPerson2987
Remark"skn-1, hsf-1, trx-1 mutants did not suppress Neuro-Nmnat1(gcIs30[Neuro-m-nonN-Nmnat1]) increased hypoxic survival." (Figure S3a)Paper_evidenceWBPaper00049307
Curator_confirmedWBPerson2987
EQ_annotationsGO_termGO:0001666PATO:0000460Paper_evidenceWBPaper00049307
Curator_confirmedWBPerson2987
Phenotype_assayGenotypegcIs30 [Neuro-m-nonN-Nmnat1]Paper_evidenceWBPaper00049307
Curator_confirmedWBPerson2987
ReferenceWBPaper00049307
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele