WormBase Tree Display for Variation: WBVar00093470
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WBVar00093470 | Name | Public_name | ok2315 | ||||||
---|---|---|---|---|---|---|---|---|---|
Other_name | T19E7.2a.1:c.130-148_693+229del | ||||||||
HGVSg | CHROMOSOME_IV:g.5654954_5656056del | ||||||||
Sequence_details | SMap | S_parent | Sequence | T19E7 | |||||
Flanking_sequences | tttttgtatgtaaattgccaatgccataat | ctcatagggtcgagagaaaatgagagagag | |||||||
Mapping_target | T19E7 | ||||||||
Type_of_mutation | Deletion | ||||||||
PCR_product | ok2315_external | ||||||||
ok2315_internal | |||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00036863 | ||||||||
Laboratory | RB | ||||||||
Person | WBPerson46 | ||||||||
KO_consortium_allele | |||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00020585 | |||||||
WBGene00004804 | |||||||||
Transcript | T19E7.1.1 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | ||||||||
cDNA_position | 577-? | ||||||||
Exon_number | 5/5 | ||||||||
T19E7.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
HGVSc | T19E7.2a.1:c.130-148_693+229del | ||||||||
Intron_number | 1-3/8 | ||||||||
Exon_number | 2-3/9 | ||||||||
T19E7.2c.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
Intron_number | 1/5 | ||||||||
Exon_number | 1/6 | ||||||||
Interactor | WBInteraction000537507 | ||||||||
Isolation | Mutagen | EMS | |||||||
Description | Phenotype_not_observed | WBPhenotype:0002423 | Paper_evidence | WBPaper00049307 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | "skn-1, hsf-1, trx-1 mutants did not suppress Neuro-Nmnat1(gcIs30[Neuro-m-nonN-Nmnat1]) increased hypoxic survival." (Figure S3a) | Paper_evidence | WBPaper00049307 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
EQ_annotations | GO_term | GO:0001666 | PATO:0000460 | Paper_evidence | WBPaper00049307 | ||||
Curator_confirmed | WBPerson2987 | ||||||||
Phenotype_assay | Genotype | gcIs30 [Neuro-m-nonN-Nmnat1] | Paper_evidence | WBPaper00049307 | |||||
Curator_confirmed | WBPerson2987 | ||||||||
Reference | WBPaper00049307 | ||||||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||||
Method | KO_consortium_allele |