WormBase Tree Display for Variation: WBVar00093541

WBVar00093541 Name: Public_name: ok2392
    Other_name: F19C6.4a.1:c.-215_644del
    HGVSg: CHROMOSOME_X:g.10016858_10017887del
  Sequence_details: SMap: S_parent: Sequence: F42G10
    Flanking_sequences: aagcgataatactccgtttcatataccagt atattagaggagttttttgggttgaaagaa
    Mapping_target: F42G10
    Type_of_mutation: Deletion
    PCR_product: ok2392_external
      ok2392_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032538
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00169891
      WBGene00008953
    Transcript: F19C6.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F19C6.4a.1:c.-215_644del
        cDNA_position: 139-997
        CDS_position: ?-644
        Protein_position: ?-215
        Intron_number: 2-4/10
        Exon_number: 1-5/11
      F19C6.4b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-846
        CDS_position: ?-644
        Protein_position: ?-215
        Intron_number: 2-4/10
        Exon_number: 1-5/11
      F42G10.3
  Isolation: Mutagen: EMS
  Reference: WBPaper00065732
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele