WormBase Tree Display for Variation: WBVar00093547

WBVar00093547 Name: Public_name: ok2398
    Other_name: ZK507.4.1:c.100_518+83del
    HGVSg: CHROMOSOME_III:g.9104177_9105850del
  Sequence_details: SMap: S_parent: Sequence: ZK507
    Flanking_sequences: tcgtttgaatcccaccattcagaacccagg aaagaaatcgcaaaagacgcaccccaatct
    Mapping_target: ZK507
    Type_of_mutation: Deletion
    PCR_product: ok2398_external
      ok2398_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032542
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00013980
      WBGene00196670
      WBGene00014624
    Transcript: ZK507.7 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: 40-?
        Exon_number: 1/1
      ZK507.4.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK507.4.1:c.100_518+83del
        cDNA_position: 235-?
        CDS_position: 100-?
        Protein_position: 34-?
        Intron_number: 2-6/8
        Exon_number: 2-6/9
      ZK507.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0000412 Paper_evidence: WBPaper00038400
        Curator_confirmed: WBPerson712
        Remark: Animals took significantly more time to respond to octanol (initiate backwards movement) than WT controls; however, this defect in response time was mild compared to osm-11(rt142) and osm-7(tm2256) null mutants. Paper_evidence: WBPaper00038400
            Curator_confirmed: WBPerson712
        Variation_effect: Null: Paper_evidence: WBPaper00038400
            Curator_confirmed: WBPerson712
        Affected_by: Molecule: WBMol:00001966 Paper_evidence: WBPaper00038400
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0001096 Paper_evidence: WBPaper00032102
        Curator_confirmed: WBPerson712
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00032102
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: ayIs4 Paper_evidence: WBPaper00032102
              Curator_confirmed: WBPerson712
  Reference: WBPaper00038400
    WBPaper00032102
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele