WormBase Tree Display for Variation: WBVar00093610

WBVar00093610 Name: Public_name: ok2464
    Other_name: F17C11.9b.3:c.512-145_723del
      F17C11.9c.1:c.488-145_699del
      F17C11.9b.2:c.512-145_723del
      F17C11.9b.1:c.512-145_723del
      F17C11.9a.1:c.587-145_798del
    HGVSg: CHROMOSOME_V:g.10966844_10967200del
  Sequence_details: SMap: S_parent: Sequence: F17C11
    Flanking_sequences: aacgtttttcatgggactgagagttggaaa accaaggctatcccacacttctgggagaac
    Mapping_target: F17C11
    Type_of_mutation: Deletion
    PCR_product: ok2464_external
      ok2464_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036929
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00045367
      WBGene00008920
    Transcript: F17C11.9b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.1:c.512-145_723del
        cDNA_position: ?-872
        CDS_position: ?-723
        Protein_position: ?-241
        Intron_number: 5/7
        Exon_number: 6/8
      F17C11.9b.3 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.3:c.512-145_723del
        cDNA_position: ?-813
        CDS_position: ?-723
        Protein_position: ?-241
        Intron_number: 4/6
        Exon_number: 5/7
      F17C11.9c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9c.1:c.488-145_699del
        cDNA_position: ?-699
        CDS_position: ?-699
        Protein_position: ?-233
        Intron_number: 4/5
        Exon_number: 5/6
      F17C11.15 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: 147-?
        Exon_number: 1/1
      F17C11.9a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9a.1:c.587-145_798del
        cDNA_position: ?-904
        CDS_position: ?-798
        Protein_position: ?-266
        Intron_number: 5/7
        Exon_number: 6/8
      F17C11.9b.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.2:c.512-145_723del
        cDNA_position: ?-841
        CDS_position: ?-723
        Protein_position: ?-241
        Intron_number: 5/7
        Exon_number: 6/8
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele