WormBase Tree Display for Variation: WBVar00093659

WBVar00093659 Name: Public_name: ok2525
    HGVSg: CHROMOSOME_X:g.4513977_4514571del
  Sequence_details: SMap: S_parent: Sequence: C07A12
    Flanking_sequences: GGCTGCGGACGACGCGGGAGCCGTCAGTTTTGGAAGTGTAGTACTCGCAT GTCTACCATATTTTGTCACACCGTGTCAAGTTGTATCAAGCACCGAAAAG
    Mapping_target: C07A12
    Type_of_mutation: Deletion
    PCR_product: ok2525_external
      ok2525_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032615
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00005008
    Transcript: C07A12.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-423
        CDS_position: ?-414
        Protein_position: ?-138
        Intron_number: 2/6
        Exon_number: 1-3/7
      C07A12.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-426
        CDS_position: ?-411
        Protein_position: ?-137
        Intron_number: 2/6
        Exon_number: 1-3/7
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0000462 Paper_evidence: WBPaper00045043
        Curator_confirmed: WBPerson557
        Phenotype_assay: Treatment: Worms grown on 5mM paraquat. Paper_evidence: WBPaper00045043
              Curator_confirmed: WBPerson557
          Temperature: 20 Paper_evidence: WBPaper00045043
              Curator_confirmed: WBPerson557
  Disease_info: Models_disease: DOID:10652
    Models_disease_in_annotation: WBDOannot00000800
  Reference: WBPaper00045043
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele