WormBase Tree Display for Variation: WBVar00093694
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| WBVar00093694 | Name | Public_name | ok2570 | ||
|---|---|---|---|---|---|
| Other_name | Y48E1B.13a.1:c.683_1225-17delinsTCCAACTTTCTAGATGTACCCCAACTTTTTTTTT | ||||
| HGVSg | CHROMOSOME_II:g.13603007_13604539delinsTCCAACTTTCTAGATGTACCCCAACTTTTTTTTT | ||||
| Sequence_details | SMap | S_parent | Sequence | Y48E1B | |
| Flanking_sequences | agccatctccagttgaatttctagatgtac | taaccaacttttttcgggaaaattgaacat | |||
| Mapping_target | Y48E1B | ||||
| Type_of_mutation | Insertion | TCCAACTTTCTAGATGTACCCCAACTTTTTTTTT | |||
| Deletion | |||||
| PCR_product | ok2570_external | ||||
| ok2570_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032638 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000819 | |||
| Transcript | Y48E1B.13a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y48E1B.13a.1:c.683_1225-17delinsTCCAACTTTCTAGATGTACCCCAACTTTTTTTTT | ||||
| cDNA_position | 683-? | ||||
| CDS_position | 683-? | ||||
| Protein_position | 228-? | ||||
| Intron_number | 5-7/9 | ||||
| Exon_number | 5-7/10 | ||||
| Y48E1B.13c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-2/2 | ||||
| Exon_number | 1-2/3 | ||||
| Y48E1B.13b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-2/4 | ||||
| Exon_number | 1-2/5 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
