WormBase Tree Display for Variation: WBVar00093744
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| WBVar00093744 | Name | Public_name | ok2629 | ||
|---|---|---|---|---|---|
| Other_name | CE19718:p.Asn98LysfsTer2 | ||||
| C32H11.12.1:c.294_694del | |||||
| HGVSg | CHROMOSOME_IV:g.12940614_12941014del | ||||
| Sequence_details | SMap | S_parent | Sequence | C32H11 | |
| Flanking_sequences | ccatgaacagtggataatcgatgagcttat | ttctggagcctgaatagaactatatttaat | |||
| Mapping_target | C32H11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2629_external | ||||
| ok2629_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032678 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007875 | |||
| Transcript | C32H11.12.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C32H11.12.1:c.294_694del | ||||
| HGVSp | CE19718:p.Asn98LysfsTer2 | ||||
| cDNA_position | 296-696 | ||||
| CDS_position | 294-694 | ||||
| Protein_position | 98-232 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | aaCGATGACTACAATCCGTACATTTTCCCATCTCCAATGGTCAAAATCAACATCGGGACGGACAACAGAAATGATGTAATGAATCAATTTGGCTTCAAAGTCGTTTATTCGAAATACCCCACTCTTGAGAAAAACATAATCAATATTGATTTGGGAAGCCCTCCAGTTGCAGCAAAACCGTCGGAAAAACTTACAACATTTGTTGGAGACAGAAACTCTATGATGTCTTTGATGGGATTCACAATGGCCGATAATTCCAAGAACTATCTTCTTCGTCAAACCGCAATTTTTGGAGGAGACTCAACGGATTCTACCTACATCGGAAGTCTCTCACAAATTTTGAACTCTCAGCAAATACTCACCACCTACGGAAATAAGATTTCGGTATACACATTTGGTTTGGat/aaat | ||||
| Amino_acid_change | NDDYNPYIFPSPMVKINIGTDNRNDVMNQFGFKVVYSKYPTLEKNIINIDLGSPPVAAKPSEKLTTFVGDRNSMMSLMGFTMADNSKNYLLRQTAIFGGDSTDSTYIGSLSQILNSQQILTTYGNKISVYTFGLD/KX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
