WormBase Tree Display for Variation: WBVar00093755
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| WBVar00093755 | Name | Public_name | ok2644 | ||
|---|---|---|---|---|---|
| Other_name | CE38539:p.Leu5SerfsTer25 | ||||
| T02E9.2a.1:c.12_435del | |||||
| T02E9.2b.1:c.12_435del | |||||
| CE13064:p.Leu5SerfsTer25 | |||||
| HGVSg | CHROMOSOME_V:g.11346577_11347000del | ||||
| Sequence_details | SMap | S_parent | Sequence | T02E9 | |
| Flanking_sequences | cgattcctgagctgtagcaacttccgcgac | cggaatagcattctggaaatagaatcaaca | |||
| Mapping_target | T02E9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2644_external | ||||
| ok2644_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032683 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001716 | |||
| Transcript | T02E9.2b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | T02E9.2b.1:c.12_435del | ||||
| HGVSp | CE38539:p.Leu5SerfsTer25 | ||||
| cDNA_position | 13-436 | ||||
| CDS_position | 12-435 | ||||
| Protein_position | 4-145 | ||||
| Exon_number | 2/7 | ||||
| Codon_change | cgACTTGTCTCCACTCTCCTTCTTGCTCAAACCACATCAGCATTCTTCTTCGGAGGAGGTGGTGGAGGTTGTGGATGTCAGCAGGCGCCAGCTTGCGCTCCACATCCAGCTCCAGCTCCATGCTCTGGAGGTAACATCGTTCAAGGATACGTTGGTGCTCCACAGCAAGGAGGATATGCTGCTGCTCCACAATATCCACAACAGGGAGGATACGGAGGAGCTCAACAAGGCTTCCAAGCTGCCCCAGCTCCATACCAACCCCAAGGAGGATACCAAGCTGGTCCAGCACCAGTTCAAGGATATCAACCACAAGCTCAAGTCCCAGCTGGAGGATATCAAGCTCCAGTTCAACCAGCTCCGGGACCAGCTGAGGTTGCTCCAGCTCAAGTTCAAGCCGGAGGAAATTACCAAGATGCTCCAGCCCAA/cg | ||||
| Amino_acid_change | RLVSTLLLAQTTSAFFFGGGGGGCGCQQAPACAPHPAPAPCSGGNIVQGYVGAPQQGGYAAAPQYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQGYQPQAQVPAGGYQAPVQPAPGPAEVAPAQVQAGGNYQDAPAQ/X | ||||
| T02E9.2a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | T02E9.2a.1:c.12_435del | ||||
| HGVSp | CE13064:p.Leu5SerfsTer25 | ||||
| cDNA_position | 13-436 | ||||
| CDS_position | 12-435 | ||||
| Protein_position | 4-145 | ||||
| Exon_number | 2/8 | ||||
| Codon_change | cgACTTGTCTCCACTCTCCTTCTTGCTCAAACCACATCAGCATTCTTCTTCGGAGGAGGTGGTGGAGGTTGTGGATGTCAGCAGGCGCCAGCTTGCGCTCCACATCCAGCTCCAGCTCCATGCTCTGGAGGTAACATCGTTCAAGGATACGTTGGTGCTCCACAGCAAGGAGGATATGCTGCTGCTCCACAATATCCACAACAGGGAGGATACGGAGGAGCTCAACAAGGCTTCCAAGCTGCCCCAGCTCCATACCAACCCCAAGGAGGATACCAAGCTGGTCCAGCACCAGTTCAAGGATATCAACCACAAGCTCAAGTCCCAGCTGGAGGATATCAAGCTCCAGTTCAACCAGCTCCGGGACCAGCTGAGGTTGCTCCAGCTCAAGTTCAAGCCGGAGGAAATTACCAAGATGCTCCAGCCCAA/cg | ||||
| Amino_acid_change | RLVSTLLLAQTTSAFFFGGGGGGCGCQQAPACAPHPAPAPCSGGNIVQGYVGAPQQGGYAAAPQYPQQGGYGGAQQGFQAAPAPYQPQGGYQAGPAPVQGYQPQAQVPAGGYQAPVQPAPGPAEVAPAQVQAGGNYQDAPAQ/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
