WormBase Tree Display for Variation: WBVar00093762
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| WBVar00093762 | Name | Public_name | ok2654 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_IV:g.5394173_5396138del | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK616 | |
| Flanking_sequences | aagaccgattgctccgaggtttccaaggca | tacaagtattgatatggactacgtcgacaa | |||
| Mapping_target | ZK616 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2654_external | ||||
| ok2654_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037038 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022774 | |||
| WBGene00022776 | |||||
| WBGene00196096 | |||||
| Transcript | ZK616.6a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-378 | ||||
| CDS_position | ?-378 | ||||
| Protein_position | ?-126 | ||||
| Intron_number | 1-2/3 | ||||
| Exon_number | 1-3/4 | ||||
| ZK616.4.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-838 | ||||
| CDS_position | ?-830 | ||||
| Protein_position | ?-277 | ||||
| Intron_number | 2-6/9 | ||||
| Exon_number | 1-7/10 | ||||
| ZK616.62 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| ZK616.6b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-195 | ||||
| CDS_position | ?-195 | ||||
| Protein_position | ?-65 | ||||
| Intron_number | 1/1 | ||||
| Exon_number | 1-2/2 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
