WormBase Tree Display for Variation: WBVar00093861
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| WBVar00093861 | Name | Public_name | ok2762 | ||
|---|---|---|---|---|---|
| Other_name | F42A6.9.1:c.883_1584del | ||||
| CE28392:p.Ala295_Glu528del | |||||
| HGVSg | CHROMOSOME_IV:g.3346200_3346901del | ||||
| Sequence_details | SMap | S_parent | Sequence | F42A6 | |
| Flanking_sequences | gttctcaatggtcgccttcaactgtgtcat | gttttcgatagcttgccggcctgatggatc | |||
| Mapping_target | F42A6 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2762_external | ||||
| ok2762_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037303 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018330 | |||
| Transcript | F42A6.9.1 | VEP_consequence | inframe_deletion | ||
| VEP_impact | MODERATE | ||||
| HGVSc | F42A6.9.1:c.883_1584del | ||||
| HGVSp | CE28392:p.Ala295_Glu528del | ||||
| cDNA_position | 992-1693 | ||||
| CDS_position | 883-1584 | ||||
| Protein_position | 295-528 | ||||
| Exon_number | 7/12 | ||||
| Codon_change | GCGCTTCGGAGGATCGATGAAAAGCAGGCGAGGATCGTGGAGTTGGAGGAGGAACTGATGAGGCAGCGGATGGGAAGGAGTAATCAGCCAAGAGATTTTACTGATAAGAACCTGTCCGGTCATGAGATGGCGACGATGCGCATGAAAATGGATCGAAGTGAGGTGGAGCTCGCGGAGAAGAAGCAGGAGCTCTTCGGGTGTCAGACAAGAATGCAGACCGCTGAGGAGACTGCGAATGAGATGAGAGGTCATCTTCAGTTGTTGAAGGATCAGCTGACAAATCGAGAGCAACATAACACTTTGCTACAGGGTGATGTGGATGCGTTAAGGCAGAAGCTGGATAGTAAGAATAAGCAGTTGGAGCAGAAAGACGAGCGTGTGGCTGCACTGGAGAGAGATCTAAGTTCCAGCAAGGCTGATGTGTCGGATAAGGGCGAGTTGATCAGGCAGACCGAGATGAAAACTTCTCAATTGATCGGCAGAGTTGACAGCCTTGAAACAACAGTTCGGGAAAAGGAGCAAGAACTCGATCGGGCTAAGATCCGCCTGCTAAGCCACCCGGATGTGGTGAAGGAGAAGGAGATGACCGAGAAAATTGAGCAAGGAGAACGAGAGAGACAGCGGCTCGCCGAGCACATTGATCAAGTGCGGAGAAATGCGGAGAAGGATGCGATGGAGCAACAGAAGACCTATCAGAATGAG/- | ||||
| Amino_acid_change | ALRRIDEKQARIVELEEELMRQRMGRSNQPRDFTDKNLSGHEMATMRMKMDRSEVELAEKKQELFGCQTRMQTAEETANEMRGHLQLLKDQLTNREQHNTLLQGDVDALRQKLDSKNKQLEQKDERVAALERDLSSSKADVSDKGELIRQTEMKTSQLIGRVDSLETTVREKEQELDRAKIRLLSHPDVVKEKEMTEKIEQGERERQRLAEHIDQVRRNAEKDAMEQQKTYQNE/- | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
