WormBase Tree Display for Variation: WBVar00093879
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WBVar00093879 | Name | Public_name | ok2781 | ||
---|---|---|---|---|---|
Other_name | F23B2.5b.1:c.56_155-125del | ||||
F23B2.4.1:c.56+917_57-556del | |||||
F23B2.5a.1:c.56_155-125del | |||||
F23B2.5c.1:c.56_155-125del | |||||
HGVSg | CHROMOSOME_IV:g.9144814_9145224del | ||||
Sequence_details | SMap | S_parent | Sequence | F23B2 | |
Flanking_sequences | ataatttcaaaattataattattattcagg | actttgcgcctaaatgtacaaaataagaga | |||
Mapping_target | F23B2 | ||||
Type_of_mutation | Deletion | ||||
PCR_product | ok2781_external | ||||
ok2781_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00032789 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00000906 | |||
WBGene00001444 | |||||
Transcript | F23B2.5b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | F23B2.5b.1:c.56_155-125del | ||||
cDNA_position | 56-? | ||||
CDS_position | 56-? | ||||
Protein_position | 19-? | ||||
Intron_number | 2/6 | ||||
Exon_number | 2/7 | ||||
F23B2.4.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F23B2.4.1:c.56+917_57-556del | ||||
Intron_number | 2/20 | ||||
F23B2.5c.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F23B2.5c.1:c.56_155-125del | ||||
cDNA_position | 56-? | ||||
CDS_position | 56-? | ||||
Protein_position | 19-? | ||||
Intron_number | 2/6 | ||||
Exon_number | 2/7 | ||||
F23B2.5a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | F23B2.5a.1:c.56_155-125del | ||||
cDNA_position | 64-? | ||||
CDS_position | 56-? | ||||
Protein_position | 19-? | ||||
Intron_number | 3/7 | ||||
Exon_number | 3/8 | ||||
Isolation | Mutagen | EMS | |||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |