WormBase Tree Display for Variation: WBVar00093882
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| WBVar00093882 | Name | Public_name | ok2784 | ||
|---|---|---|---|---|---|
| Other_name | R166.5a.1:c.747_1436+95delinsT | ||||
| R166.5b.2:c.753_1442+95delinsT | |||||
| R166.5b.1:c.753_1442+95delinsT | |||||
| R166.5b.3:c.753_1442+95delinsT | |||||
| HGVSg | CHROMOSOME_II:g.10545341_10546171delinsA | ||||
| Sequence_details | SMap | S_parent | Sequence | R166 | |
| Flanking_sequences | gtgcaggataagaaggaattgaaccaacga | ttcacctcgcggaggatacgctttcgagaa | |||
| Mapping_target | R166 | ||||
| Type_of_mutation | Insertion | A | |||
| Deletion | |||||
| PCR_product | ok2784_external | ||||
| ok2784_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032792 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011304 | |||
| Transcript | R166.5b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R166.5b.2:c.753_1442+95delinsT | ||||
| cDNA_position | 1012-? | ||||
| CDS_position | 753-? | ||||
| Protein_position | 251-? | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 5-6/10 | ||||
| R166.5a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R166.5a.1:c.747_1436+95delinsT | ||||
| cDNA_position | 974-? | ||||
| CDS_position | 747-? | ||||
| Protein_position | 249-? | ||||
| Intron_number | 4-5/8 | ||||
| Exon_number | 4-5/9 | ||||
| R166.5b.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R166.5b.3:c.753_1442+95delinsT | ||||
| cDNA_position | 833-? | ||||
| CDS_position | 753-? | ||||
| Protein_position | 251-? | ||||
| Intron_number | 4-5/8 | ||||
| Exon_number | 4-5/9 | ||||
| R166.5b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R166.5b.1:c.753_1442+95delinsT | ||||
| cDNA_position | 917-? | ||||
| CDS_position | 753-? | ||||
| Protein_position | 251-? | ||||
| Intron_number | 5-6/9 | ||||
| Exon_number | 5-6/10 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
