WormBase Tree Display for Variation: WBVar00093894

WBVar00093894 Name: Public_name: ok2797
    HGVSg: CHROMOSOME_I:g.10347940_10348930del
  Sequence_details: SMap: S_parent: Sequence: ZC434
    Flanking_sequences: agaaacattaaacgttataaagttgaagtt aaaaagtaattacatttttctctcccaaat
    Mapping_target: ZC434
    Type_of_mutation: Deletion
    PCR_product: ok2797_external
      ok2797_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037180
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00013893
      WBGene00013894
    Transcript: ZC434.7b.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1662-?
        Exon_number: 12/12
      ZC434.7b.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1708-?
        Exon_number: 11/11
      ZC434.7a.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1402-?
        CDS_position: 1402-?
        Protein_position: 468-?
        Exon_number: 7-8/8
      ZC434.7b.4 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1785-?
        Exon_number: 11/11
      ZC434.7b.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 1715-?
        Exon_number: 11/11
      ZC434.8.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 3-4/5
        Exon_number: 4-6/6
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele