WormBase Tree Display for Variation: WBVar00093896

WBVar00093896 Name: Public_name: ok2799
    Other_name: K12G11.3.1:c.241_831+3del
    HGVSg: CHROMOSOME_V:g.11888536_11889172del
  Sequence_details: SMap: S_parent: Sequence: K12G11
    Flanking_sequences: ggagctggaagtgttgttcaaataggaaag ccttttaaataatatttggatttaaaatta
    Mapping_target: K12G11
    Type_of_mutation: Deletion
    PCR_product: ok2799_external
      ok2799_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032797
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00010790
    Transcript: K12G11.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K12G11.3.1:c.241_831+3del
        cDNA_position: 289-?
        CDS_position: 241-?
        Protein_position: 81-?
        Intron_number: 2-3/4
        Exon_number: 2-3/5
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0001171 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: shortened lifespan upon exposure to S. maltophilia JCMS Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
      WBPhenotype:0002398 Paper_evidence: WBPaper00046860
        Curator_confirmed: WBPerson14935
        Remark: "sodh-1(ok2799) L1s fail to aggregate on ethanol-containing plates but aggregate normally in the presence of 17 mM potassium acetate. The other sodh-1 alleles, bet20 and tm2829, showed the same result." Paper_evidence: WBPaper00046860
            Curator_confirmed: WBPerson14935
        Affected_by: Molecule: WBMol:00004925 Paper_evidence: WBPaper00046860
              Curator_confirmed: WBPerson14935
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00059839
        Curator_confirmed: WBPerson42723
        Remark: NO lifespan phenotype upon exposure to E. coli OP50 Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Variation_effect: Null: Paper_evidence: WBPaper00059839
            Curator_confirmed: WBPerson42723
        Phenotype_assay: Control_strain: WBStrain00000001 Paper_evidence: WBPaper00059839
              Curator_confirmed: WBPerson42723
  Reference: WBPaper00046860
    WBPaper00059839
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele