WormBase Tree Display for Variation: WBVar00093898
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| WBVar00093898 | Name | Public_name | ok2801 | ||
|---|---|---|---|---|---|
| Other_name | CE28614:p.Asp70ValfsTer5 | ||||
| M01H9.3a.1:c.204_714del | |||||
| M01H9.3c.1:c.51_561del | |||||
| M01H9.3d.2:c.21_531del | |||||
| CE40982:p.Asp9ValfsTer5 | |||||
| M01H9.3b.2:c.18+3_432del | |||||
| M01H9.3b.1:c.18+3_432del | |||||
| M01H9.3d.1:c.21_531del | |||||
| CE37722:p.Asp19ValfsTer5 | |||||
| M01H9.3e.1:c.18+3_426del | |||||
| HGVSg | CHROMOSOME_IV:g.4468945_4469821del | ||||
| Sequence_details | SMap | S_parent | Sequence | M01H9 | |
| Flanking_sequences | tattcagtctttcatgtagttgctacgctt | acttgtggagccttggacatcctgaaatat | |||
| Mapping_target | M01H9 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2801_external | ||||
| ok2801_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032799 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019719 | |||
| Transcript | M01H9.3b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | M01H9.3b.2:c.18+3_432del | ||||
| cDNA_position | ?-649 | ||||
| CDS_position | ?-432 | ||||
| Protein_position | ?-144 | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 3-5/6 | ||||
| M01H9.3a.1 (11) | |||||
| M01H9.3e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01H9.3e.1:c.18+3_426del | ||||
| cDNA_position | ?-1411 | ||||
| CDS_position | ?-426 | ||||
| Protein_position | ?-142 | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 3-5/6 | ||||
| M01H9.3d.2 (11) | |||||
| M01H9.3c.1 (11) | |||||
| M01H9.3d.1 (11) | |||||
| M01H9.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | M01H9.3b.1:c.18+3_432del | ||||
| cDNA_position | ?-545 | ||||
| CDS_position | ?-432 | ||||
| Protein_position | ?-144 | ||||
| Intron_number | 3-5/6 | ||||
| Exon_number | 4-6/7 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
