WormBase Tree Display for Variation: WBVar00093905
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| WBVar00093905 | Name | Public_name | ok2808 | ||
|---|---|---|---|---|---|
| Other_name | Y39A3CL.5a.1:c.182-208_561del | ||||
| HGVSg | CHROMOSOME_III:g.1814467_1815054del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y39A3CL | |
| Flanking_sequences | aaattcgaactctccatcatttttcacat | cccaaagctccggtggctccggtggctccagtgat | |||
| Mapping_target | Y39A3CL | ||||
| Type_of_mutation | Deletion | GGGGCACAATTTTCAGAGCTTTAGCATTAAAACAAGACAAAATGTGCATTTCGTCGTAAAATATCAGGTGTTTGCGTACTTTCGAGGCTACAGTAACCCTCCATTTTCTAAAATTACTGGAAAATGACCTAAAACCCCCAAAAAAGTGTTCCAGGGGTAAAAAACCACGGAGAACTCGAATTTGAGCTCAAAAATTTAAAATTTCAGGTCTTTTCGACGGATTCGGCGGCACCGACCTGAAAACCATAATGCGGCATTTGCGTCGAAGACGTCCAAAAAGCGGCCAGGCCCTGACAAACTTCATGTTGTCAGGAAACATGGAAAAAGTCGTAGATCAGCATGTCAAAGACTTTGTCCATCATTTTGGACGGATCAATCCGGAAAATGGCAGAATTATGGGCGCCCTGCGTGGCAACGACTTTTTCAATTTTGGAGGACTCCATAATAATTTGGGAAATACCGGAAAAGTCTATCTGGACAACTTGATGAAAGGAAAATGTGGGAAGAAACGGAAAGTGCACAAGTTTAAGCCAATCGTTGTGGAAGAGCTCGACTTTGGAGCGCCAAAGCCGGCAGTGCCGGCGACG | |||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032805 | ||||
| Laboratory | RB | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000545 | |||
| Transcript | Y39A3CL.5a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y39A3CL.5a.1:c.182-208_561del | ||||
| cDNA_position | ?-565 | ||||
| CDS_position | ?-561 | ||||
| Protein_position | ?-187 | ||||
| Intron_number | 3/10 | ||||
| Exon_number | 4/11 | ||||
| Remark | Sequenced by Christine Roberts in Dr.Christopher Link's lab at UC Boulder | Person_evidence | WBPerson12037 | ||
| Method | KO_consortium_allele |
