WormBase Tree Display for Variation: WBVar00093969
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| WBVar00093969 | Name | Public_name | ok2874 | ||
|---|---|---|---|---|---|
| Other_name | CE34451:p.Gln1246_Cys1365del | ||||
| ZK337.1c.2:c.3736_4095del | |||||
| CE16718:p.Gln1238_Cys1357del | |||||
| ZK337.1a.2:c.3712_4071del | |||||
| ZK337.1c.1:c.3736_4095del | |||||
| ZK337.1a.1:c.3712_4071del | |||||
| ZK337.1b.1:c.3745_4104del | |||||
| CE34450:p.Gln1249_Cys1368del | |||||
| HGVSg | CHROMOSOME_I:g.14999785_15000144del | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK337 | |
| Flanking_sequences | tctctctcaattattcgttggttagtatcc | aagtgggcttttttcaaattttttcaagtt | |||
| Mapping_target | ZK337 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK2874_external | ||||
| OK2874_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037132 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013969 | |||
| Transcript | ZK337.1a.1 | VEP_consequence | inframe_deletion,splice_region_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | ZK337.1a.1:c.3712_4071del | ||||
| HGVSp | CE16718:p.Gln1238_Cys1357del | ||||
| cDNA_position | 3858-4217 | ||||
| CDS_position | 3712-4071 | ||||
| Protein_position | 1238-1357 | ||||
| Exon_number | 16/20 | ||||
| Codon_change | CAACGCAACGAGCTAGGAGGATTCACTTCCACTCAAGACACTGTCATGGCTCTTCAAGCTCTCTCTTCCTACGCAGCAGTCACTTATTCCGACAAACACACAAGTCAAGTAACAATTCTCAACGGAAAACATACTCACTCATTTGATATCAACATAAGAAACGCAATTGTTCTCCAATCCTATCAACTATCTTCATTGAATGATGCAGTTTCAATTAATGCCAATGGAACTGGTGTGGTCTTCGCTCAGTTGAGTTATTCTTACTACAGGGACTCTTTGAATGACGATGCTCCGTTCTTCTGCTCCCAGGAGATCAAGGAAATAAGAGCTGGAAATCGACTGCAATTGGATTTGTGTTGC/- | ||||
| Amino_acid_change | QRNELGGFTSTQDTVMALQALSSYAAVTYSDKHTSQVTILNGKHTHSFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCSQEIKEIRAGNRLQLDLCC/- | ||||
| ZK337.1b.1 | VEP_consequence | inframe_deletion,splice_region_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | ZK337.1b.1:c.3745_4104del | ||||
| HGVSp | CE34450:p.Gln1249_Cys1368del | ||||
| cDNA_position | 3850-4209 | ||||
| CDS_position | 3745-4104 | ||||
| Protein_position | 1249-1368 | ||||
| Exon_number | 15/20 | ||||
| Codon_change | CAACGCAACGAGCTAGGAGGATTCACTTCCACTCAAGACACTGTCATGGCTCTTCAAGCTCTCTCTTCCTACGCAGCAGTCACTTATTCCGACAAACACACAAGTCAAGTAACAATTCTCAACGGAAAACATACTCACTCATTTGATATCAACATAAGAAACGCAATTGTTCTCCAATCCTATCAACTATCTTCATTGAATGATGCAGTTTCAATTAATGCCAATGGAACTGGTGTGGTCTTCGCTCAGTTGAGTTATTCTTACTACAGGGACTCTTTGAATGACGATGCTCCGTTCTTCTGCTCCCAGGAGATCAAGGAAATAAGAGCTGGAAATCGACTGCAATTGGATTTGTGTTGC/- | ||||
| Amino_acid_change | QRNELGGFTSTQDTVMALQALSSYAAVTYSDKHTSQVTILNGKHTHSFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCSQEIKEIRAGNRLQLDLCC/- | ||||
| ZK337.1a.2 | VEP_consequence | inframe_deletion,splice_region_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | ZK337.1a.2:c.3712_4071del | ||||
| HGVSp | CE16718:p.Gln1238_Cys1357del | ||||
| cDNA_position | 3778-4137 | ||||
| CDS_position | 3712-4071 | ||||
| Protein_position | 1238-1357 | ||||
| Exon_number | 15/19 | ||||
| Codon_change | CAACGCAACGAGCTAGGAGGATTCACTTCCACTCAAGACACTGTCATGGCTCTTCAAGCTCTCTCTTCCTACGCAGCAGTCACTTATTCCGACAAACACACAAGTCAAGTAACAATTCTCAACGGAAAACATACTCACTCATTTGATATCAACATAAGAAACGCAATTGTTCTCCAATCCTATCAACTATCTTCATTGAATGATGCAGTTTCAATTAATGCCAATGGAACTGGTGTGGTCTTCGCTCAGTTGAGTTATTCTTACTACAGGGACTCTTTGAATGACGATGCTCCGTTCTTCTGCTCCCAGGAGATCAAGGAAATAAGAGCTGGAAATCGACTGCAATTGGATTTGTGTTGC/- | ||||
| Amino_acid_change | QRNELGGFTSTQDTVMALQALSSYAAVTYSDKHTSQVTILNGKHTHSFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCSQEIKEIRAGNRLQLDLCC/- | ||||
| ZK337.1c.2 | VEP_consequence | inframe_deletion,splice_region_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | ZK337.1c.2:c.3736_4095del | ||||
| HGVSp | CE34451:p.Gln1246_Cys1365del | ||||
| cDNA_position | 3771-4130 | ||||
| CDS_position | 3736-4095 | ||||
| Protein_position | 1246-1365 | ||||
| Exon_number | 15/19 | ||||
| Codon_change | CAACGCAACGAGCTAGGAGGATTCACTTCCACTCAAGACACTGTCATGGCTCTTCAAGCTCTCTCTTCCTACGCAGCAGTCACTTATTCCGACAAACACACAAGTCAAGTAACAATTCTCAACGGAAAACATACTCACTCATTTGATATCAACATAAGAAACGCAATTGTTCTCCAATCCTATCAACTATCTTCATTGAATGATGCAGTTTCAATTAATGCCAATGGAACTGGTGTGGTCTTCGCTCAGTTGAGTTATTCTTACTACAGGGACTCTTTGAATGACGATGCTCCGTTCTTCTGCTCCCAGGAGATCAAGGAAATAAGAGCTGGAAATCGACTGCAATTGGATTTGTGTTGC/- | ||||
| Amino_acid_change | QRNELGGFTSTQDTVMALQALSSYAAVTYSDKHTSQVTILNGKHTHSFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCSQEIKEIRAGNRLQLDLCC/- | ||||
| ZK337.1c.1 | VEP_consequence | inframe_deletion,splice_region_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | ZK337.1c.1:c.3736_4095del | ||||
| HGVSp | CE34451:p.Gln1246_Cys1365del | ||||
| cDNA_position | 3830-4189 | ||||
| CDS_position | 3736-4095 | ||||
| Protein_position | 1246-1365 | ||||
| Exon_number | 16/20 | ||||
| Codon_change | CAACGCAACGAGCTAGGAGGATTCACTTCCACTCAAGACACTGTCATGGCTCTTCAAGCTCTCTCTTCCTACGCAGCAGTCACTTATTCCGACAAACACACAAGTCAAGTAACAATTCTCAACGGAAAACATACTCACTCATTTGATATCAACATAAGAAACGCAATTGTTCTCCAATCCTATCAACTATCTTCATTGAATGATGCAGTTTCAATTAATGCCAATGGAACTGGTGTGGTCTTCGCTCAGTTGAGTTATTCTTACTACAGGGACTCTTTGAATGACGATGCTCCGTTCTTCTGCTCCCAGGAGATCAAGGAAATAAGAGCTGGAAATCGACTGCAATTGGATTTGTGTTGC/- | ||||
| Amino_acid_change | QRNELGGFTSTQDTVMALQALSSYAAVTYSDKHTSQVTILNGKHTHSFDINIRNAIVLQSYQLSSLNDAVSINANGTGVVFAQLSYSYYRDSLNDDAPFFCSQEIKEIRAGNRLQLDLCC/- | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
