WormBase Tree Display for Variation: WBVar00093994
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| WBVar00093994 | Name | Public_name | ok2902 | ||
|---|---|---|---|---|---|
| Other_name | Y71D11A.1b.1:c.3483_3891del | ||||
| CE53391:p.Thr1162Ter | |||||
| Y71D11A.1a.1:c.6186_6594del | |||||
| CE53242:p.Thr2063Ter | |||||
| HGVSg | CHROMOSOME_III:g.1172316_1172724del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y92C3A | |
| Flanking_sequences | agggccagtgacgactacgcaagtaccatc | ataatgttcgaagcggatcgagagcggcat | |||
| Mapping_target | Y92C3A | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2902_external | ||||
| ok2902_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032839 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022103 | |||
| Transcript | Y71D11A.1b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y71D11A.1b.1:c.3483_3891del | ||||
| HGVSp | CE53391:p.Thr1162Ter | ||||
| cDNA_position | 3483-3891 | ||||
| CDS_position | 3483-3891 | ||||
| Protein_position | 1161-1297 | ||||
| Exon_number | 11/18 | ||||
| Codon_change | tcCACAGAGGCTCCCGCCACAAGCACCCAGAGCTCGGAAGAGTCCCCTTCATCAAGAACATCAGAGCTTCCGACACTACCTCCAGCAACACCCCGCATCACCTCAAGACCTTCCCAACTAACTCTAGCCCCCACCGAAGACATCTCCATGGTCTCCACTGAACAAGGCCCTACCCTCGCCCCGATCGATCTTCCGACTCGGGCAGTGACCGGAAGGGTGATCCCTCTGGACTCCGGCAGGTTCACCTTTACCAGCCCGATCTACTCAGCGTTCTCTCTGGAAGGAGACTTCAAGTCTGGCATCGAGCTGGAGATCAAGCCGACGCTCGCCGTCCAGGGATCCTCTGAACCTCCGAGCTTCTCCATCGAAGACACAACACTCCCATTCTTCCTCACCCCTGAAGGCAAGCTC/tc | ||||
| Amino_acid_change | STEAPATSTQSSEESPSSRTSELPTLPPATPRITSRPSQLTLAPTEDISMVSTEQGPTLAPIDLPTRAVTGRVIPLDSGRFTFTSPIYSAFSLEGDFKSGIELEIKPTLAVQGSSEPPSFSIEDTTLPFFLTPEGKL/X | ||||
| Y71D11A.1a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y71D11A.1a.1:c.6186_6594del | ||||
| HGVSp | CE53242:p.Thr2063Ter | ||||
| cDNA_position | 6186-6594 | ||||
| CDS_position | 6186-6594 | ||||
| Protein_position | 2062-2198 | ||||
| Exon_number | 18/26 | ||||
| Codon_change | tcCACAGAGGCTCCCGCCACAAGCACCCAGAGCTCGGAAGAGTCCCCTTCATCAAGAACATCAGAGCTTCCGACACTACCTCCAGCAACACCCCGCATCACCTCAAGACCTTCCCAACTAACTCTAGCCCCCACCGAAGACATCTCCATGGTCTCCACTGAACAAGGCCCTACCCTCGCCCCGATCGATCTTCCGACTCGGGCAGTGACCGGAAGGGTGATCCCTCTGGACTCCGGCAGGTTCACCTTTACCAGCCCGATCTACTCAGCGTTCTCTCTGGAAGGAGACTTCAAGTCTGGCATCGAGCTGGAGATCAAGCCGACGCTCGCCGTCCAGGGATCCTCTGAACCTCCGAGCTTCTCCATCGAAGACACAACACTCCCATTCTTCCTCACCCCTGAAGGCAAGCTC/tc | ||||
| Amino_acid_change | STEAPATSTQSSEESPSSRTSELPTLPPATPRITSRPSQLTLAPTEDISMVSTEQGPTLAPIDLPTRAVTGRVIPLDSGRFTFTSPIYSAFSLEGDFKSGIELEIKPTLAVQGSSEPPSFSIEDTTLPFFLTPEGKL/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
