WormBase Tree Display for Variation: WBVar00094056
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| WBVar00094056 | Name | Public_name | ok2969 | ||
|---|---|---|---|---|---|
| Other_name | Y41E3.3d.1:c.479-78_771delinsATGAAGCACATATT | ||||
| Y41E3.3b.1:c.479-78_771delinsATGAAGCACATATT | |||||
| Y41E3.3c.1:c.878-78_1170delinsATGAAGCACATATT | |||||
| Y41E3.3a.1:c.878-78_1170delinsATGAAGCACATATT | |||||
| HGVSg | CHROMOSOME_IV:g.14994286_14994656delinsATGAAGCACATATT | ||||
| Sequence_details | SMap | S_parent | Sequence | Y41E3 | |
| Flanking_sequences | tacagtttgaaaattgacacttaaaaaaac | cttcttgaagcacatattaaacatggaatt | |||
| Mapping_target | Y41E3 | ||||
| Type_of_mutation | Insertion | ATGAAGCACATATT | |||
| Deletion | |||||
| PCR_product | ok2969_external | ||||
| ok2969_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032871 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012763 | |||
| WBGene00172252 | |||||
| Transcript | Y41E3.413 | ||||
| Y41E3.3d.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y41E3.3d.1:c.479-78_771delinsATGAAGCACATATT | ||||
| cDNA_position | ?-771 | ||||
| CDS_position | ?-771 | ||||
| Protein_position | ?-257 | ||||
| Intron_number | 4/4 | ||||
| Exon_number | 5/5 | ||||
| Y41E3.3c.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y41E3.3c.1:c.878-78_1170delinsATGAAGCACATATT | ||||
| cDNA_position | ?-1187 | ||||
| CDS_position | ?-1170 | ||||
| Protein_position | ?-390 | ||||
| Intron_number | 8/10 | ||||
| Exon_number | 9/11 | ||||
| Y41E3.3b.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y41E3.3b.1:c.479-78_771delinsATGAAGCACATATT | ||||
| cDNA_position | ?-771 | ||||
| CDS_position | ?-771 | ||||
| Protein_position | ?-257 | ||||
| Intron_number | 4/6 | ||||
| Exon_number | 5/7 | ||||
| Y41E3.3a.1 | VEP_consequence | splice_acceptor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y41E3.3a.1:c.878-78_1170delinsATGAAGCACATATT | ||||
| cDNA_position | ?-1173 | ||||
| CDS_position | ?-1170 | ||||
| Protein_position | ?-390 | ||||
| Intron_number | 8/11 | ||||
| Exon_number | 9/12 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
