WormBase Tree Display for Variation: WBVar00094060
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| WBVar00094060 | Name | Public_name | ok2973 | ||
|---|---|---|---|---|---|
| Other_name | CE16034:p.Leu40_Glu173delinsGln | ||||
| F44G3.2.1:c.119_517del | |||||
| HGVSg | CHROMOSOME_V:g.16104212_16104610del | ||||
| Sequence_details | SMap | S_parent | Sequence | F44G3 | |
| Flanking_sequences | acggtcctgatggtgcaaaatgcagctcgc | aattttccgacgaggaactcaaggggactt | |||
| Mapping_target | F44G3 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok2973_external | ||||
| ok2973_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00026450 | ||||
| WBStrain00032874 | |||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009706 | |||
| Transcript | F44G3.2.1 | VEP_consequence | inframe_deletion | ||
| VEP_impact | MODERATE | ||||
| HGVSc | F44G3.2.1:c.119_517del | ||||
| HGVSp | CE16034:p.Leu40_Glu173delinsGln | ||||
| cDNA_position | 160-558 | ||||
| CDS_position | 119-517 | ||||
| Protein_position | 40-173 | ||||
| Exon_number | 3/6 | ||||
| Codon_change | cTTCTTAAGAAAAATTTGACCAAGGATGTCATCGAGAAGCTCAAAACAAAGAGTACAAAGCTCGGAGCCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGTTTGGACGCACTGGTCGGGGTATACGCTCCAGATGCTGAAGCTTATACTTTGTTTGCTCCATTGTTTGATAAGATTATTGAGGATTATCATGGGCTCGGCCCGGATCAGAAGCAACCACCAGTCGATCTTGGAGAGGGAAAGACCAAGGAGTTCCCACCGTTGGATCCCAAGGGAAAATACATCAAATCGACTAGAATTCGCTGTGGACGTTCGTTGAATGGATATCAATTTAATCCCTGTCTCACTGAGGATAACTATCTCGAGATGGAAGAAAAGGTGAAGAAGGCATTTTCAGaa/caa | ||||
| Amino_acid_change | LLKKNLTKDVIEKLKTKSTKLGANLYDCIRSGVYCLDALVGVYAPDAEAYTLFAPLFDKIIEDYHGLGPDQKQPPVDLGEGKTKEFPPLDPKGKYIKSTRIRCGRSLNGYQFNPCLTEDNYLEMEEKVKKAFSE/Q | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
