WormBase Tree Display for Variation: WBVar00094070

WBVar00094070 Name: Public_name: ok2983
    Other_name: T24D11.1e.1:c.2147_2607+13del
      T24D11.1c.1:c.881_1341+13del
      T24D11.1b.1:c.2138_2598+13del
      T24D11.1f.1:c.671_1131+13del
      T24D11.1d.1:c.1838_2298+13del
      T24D11.1a.1:c.1958_2418+13del
    HGVSg: CHROMOSOME_X:g.16399313_16399848del
  Sequence_details: SMap: S_parent: Sequence: F01G12
    Flanking_sequences: tcacaattagaaacatgaaacgcctttagt ggttttgagtctcaagctccataacctttt
    Mapping_target: F01G12
    Type_of_mutation: Deletion
    PCR_product: ok2983_external
      ok2983_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032884
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00020770
    Transcript: T24D11.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1d.1:c.1838_2298+13del
        cDNA_position: 1838-?
        CDS_position: 1838-?
        Protein_position: 613-?
        Intron_number: 8-9/9
        Exon_number: 8-9/10
      T24D11.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1a.1:c.1958_2418+13del
        cDNA_position: 1958-?
        CDS_position: 1958-?
        Protein_position: 653-?
        Intron_number: 9-10/10
        Exon_number: 9-10/11
      T24D11.1f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1f.1:c.671_1131+13del
        cDNA_position: 671-?
        CDS_position: 671-?
        Protein_position: 224-?
        Intron_number: 3-4/4
        Exon_number: 3-4/5
      T24D11.1e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1e.1:c.2147_2607+13del
        cDNA_position: 2147-?
        CDS_position: 2147-?
        Protein_position: 716-?
        Intron_number: 10-11/11
        Exon_number: 10-11/12
      T24D11.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1c.1:c.881_1341+13del
        cDNA_position: 882-?
        CDS_position: 881-?
        Protein_position: 294-?
        Intron_number: 6-7/7
        Exon_number: 6-7/8
      T24D11.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24D11.1b.1:c.2138_2598+13del
        cDNA_position: 2138-?
        CDS_position: 2138-?
        Protein_position: 713-?
        Intron_number: 10-11/11
        Exon_number: 10-11/12
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele