WormBase Tree Display for Variation: WBVar00094079
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| WBVar00094079 | Name | Public_name | ok2993 | ||
|---|---|---|---|---|---|
| Other_name | CE16034:p.Ala62ValfsTer13 | ||||
| F44G3.2.1:c.185_722delinsTCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGAT | |||||
| HGVSg | CHROMOSOME_V:g.16104278_16104815delinsTCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGAT | ||||
| Sequence_details | SMap | S_parent | Sequence | F44G3 | |
| Flanking_sequences | agctcaaaacaaagagtacaaagctcggag | ggatcatttgagaattatttcaatgcaaga | |||
| Mapping_target | F44G3 | ||||
| Type_of_mutation | Insertion | TCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGAT | |||
| Deletion | |||||
| PCR_product | ok2993_external | ||||
| ok2993_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00026451 | ||||
| WBStrain00032892 | |||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009706 | |||
| Transcript | F44G3.2.1 | VEP_consequence | stop_gained,frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F44G3.2.1:c.185_722delinsTCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGAT | ||||
| HGVSp | CE16034:p.Ala62ValfsTer13 | ||||
| cDNA_position | 226-763 | ||||
| CDS_position | 185-722 | ||||
| Protein_position | 62-241 | ||||
| Exon_number | 3/6 | ||||
| Codon_change | gCCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGTTTGGACGCACTGGTCGGGGTATACGCTCCAGATGCTGAAGCTTATACTTTGTTTGCTCCATTGTTTGATAAGATTATTGAGGATTATCATGGGCTCGGCCCGGATCAGAAGCAACCACCAGTCGATCTTGGAGAGGGAAAGACCAAGGAGTTCCCACCGTTGGATCCCAAGGGAAAATACATCAAATCGACTAGAATTCGCTGTGGACGTTCGTTGAATGGATATCAATTTAATCCCTGTCTCACTGAGGATAACTATCTCGAGATGGAAGAAAAGGTGAAGAAGGCATTTTCAGAATTTTCCGACGAGGAACTCAAGGGGACTTACTATCCGTTGGATGGAATGAGCAAGGATACCCAGAACCAGTTGATTGCTGATCACTTCCTGTTCAAGGAAGGCGACAGGCATCTTCAATACGCAAATGCTTGCAACTTCTGGCCAAAAGGACGCGGTATTTTCCATAACAACAAGAAAACTTTTTTGATTTGGGTGAATGAAGAg/gTCAATCTTTACGACTGCATCAGATCGGGTGTTTACTGATg | ||||
| Amino_acid_change | ANLYDCIRSGVYCLDALVGVYAPDAEAYTLFAPLFDKIIEDYHGLGPDQKQPPVDLGEGKTKEFPPLDPKGKYIKSTRIRCGRSLNGYQFNPCLTEDNYLEMEEKVKKAFSEFSDEELKGTYYPLDGMSKDTQNQLIADHFLFKEGDRHLQYANACNFWPKGRGIFHNNKKTFLIWVNEE/VNLYDCIRSGVY*X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
