WormBase Tree Display for Variation: WBVar00094082
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| WBVar00094082 | Name | Public_name | ok2996 | ||
|---|---|---|---|---|---|
| Other_name | C16E9.2b.1:c.-1080_-521delinsA | ||||
| C16E9.2a.1:c.289+110_665delinsA | |||||
| C16E9.2b.3:c.-939+110_-521delinsA | |||||
| C16E9.2b.2:c.-945+110_-521delinsA | |||||
| HGVSg | CHROMOSOME_X:g.6936361_6937059delinsA | ||||
| Sequence_details | SMap | S_parent | Sequence | C16E9 | |
| Flanking_sequences | agaaacgatctttattaacatcgttagtat | tgtgcgtgacggagagtgtgtatgtgttga | |||
| Mapping_target | C16E9 | ||||
| Type_of_mutation | Insertion | A | |||
| Deletion | |||||
| PCR_product | ok2996_external | ||||
| ok2996_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032895 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00201116 | |||
| WBGene00015866 | |||||
| Transcript | C16E9.2b.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C16E9.2b.3:c.-939+110_-521delinsA | ||||
| cDNA_position | ?-741 | ||||
| Intron_number | 3-5/10 | ||||
| Exon_number | 4-6/11 | ||||
| C16E9.2b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16E9.2b.2:c.-945+110_-521delinsA | ||||
| cDNA_position | ?-748 | ||||
| Intron_number | 3-5/10 | ||||
| Exon_number | 4-6/11 | ||||
| C16E9.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16E9.2a.1:c.289+110_665delinsA | ||||
| cDNA_position | ?-698 | ||||
| CDS_position | ?-665 | ||||
| Protein_position | ?-222 | ||||
| Intron_number | 4-7/11 | ||||
| Exon_number | 5-8/12 | ||||
| C16E9.24 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| C16E9.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | C16E9.2b.1:c.-1080_-521delinsA | ||||
| cDNA_position | 434-993 | ||||
| Intron_number | 3-5/10 | ||||
| Exon_number | 3-6/11 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
