WormBase Tree Display for Variation: WBVar00094109
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| WBVar00094109 | Name | Public_name | ok3023 | ||
|---|---|---|---|---|---|
| Other_name | CE01446:p.Ser311IlefsTer6 | ||||
| ZK1236.1.1:c.930_1437del | |||||
| HGVSg | CHROMOSOME_III:g.8430466_8430973del | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK1236 | |
| Flanking_sequences | ggttggagagacacttttcgctgaaacaac | gattcgactcgtctcgtgatcctttggagg | |||
| Mapping_target | ZK1236 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok3023_external | ||||
| ok3023_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032917 | ||||
| WBStrain00037198 | |||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022862 | |||
| Transcript | ZK1236.1.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1236.1.1:c.930_1437del | ||||
| HGVSp | CE01446:p.Ser311IlefsTer6 | ||||
| cDNA_position | 974-1481 | ||||
| CDS_position | 930-1437 | ||||
| Protein_position | 310-479 | ||||
| Exon_number | 6/8 | ||||
| Codon_change | acTTCTCGGGATTCTGTAAAAACATTCGCTGAAATTAAAGGAGTGAAACCAACCGTATATGCTGGCTTATTTCCAGTCGAAACATCAGATTATGAAAGTCTAAAACAGGCTGTGGAACGATTATGCCTTAATGATCCTTCGGTTACTGTAATTCCCGATTCAAGCAAAGCACTTGGACTTGGATGGAGAATCGGGTTTCTTGGTGTTTTACACATGGAAGTTTTCGGAGCTCGTCTATCACAAGAATACGATGCAAGTGTGATCCTTTGCCAACCAAGTGTAGAATATCGAGCGAAGATTAAGGATAATGAGACGATTCGAAAAAAGCGGTATGATGGAATGGAGGAGATTCGAATTCTTGATCCAAGCAAGTTCCCCGATGAAAGTGATGTAGATAGCTTCCTAGAACCAATGGTAAAAGTCCGAATGATTGTTCCAAATGAAATGATGGGTACTGTCAATGGATTGTGCTCCGAATGTCGTGGTGAACGAGGAGAGATCACATCGATC/ac | ||||
| Amino_acid_change | TSRDSVKTFAEIKGVKPTVYAGLFPVETSDYESLKQAVERLCLNDPSVTVIPDSSKALGLGWRIGFLGVLHMEVFGARLSQEYDASVILCQPSVEYRAKIKDNETIRKKRYDGMEEIRILDPSKFPDESDVDSFLEPMVKVRMIVPNEMMGTVNGLCSECRGERGEITSI/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
