WormBase Tree Display for Variation: WBVar00094113
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| WBVar00094113 | Name | Public_name | ok3027 | ||
|---|---|---|---|---|---|
| Other_name | Y47D3B.6.1:c.189_746delinsCTCCC | ||||
| CE24344:p.Tyr64SerfsTer32 | |||||
| HGVSg | CHROMOSOME_III:g.11427556_11428113delinsCTCCC | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47D3B | |
| Flanking_sequences | gatgatggctccaccagcaccactcccagc | agtctgccagtgcgccggagcctacgagcc | |||
| Mapping_target | Y47D3B | ||||
| Type_of_mutation | Insertion | CTCCC | |||
| Deletion | |||||
| PCR_product | OK3027_external | ||||
| OK3027_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037212 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012942 | |||
| Transcript | Y47D3B.6.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y47D3B.6.1:c.189_746delinsCTCCC | ||||
| HGVSp | CE24344:p.Tyr64SerfsTer32 | ||||
| cDNA_position | 210-767 | ||||
| CDS_position | 189-746 | ||||
| Protein_position | 63-249 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | gcATACGCTCCAGCTCCACTTCCAGCATATGCTCCAGCTCCACTCCCAGCTCCAGTCTTCGCTGCTCCAGCTCCAGCTCCAGTCTTCGCCGCTCCATTCGCCGCTCCACCAGCACCAGTGATCGCTGCTCAACCAGCTCTCGGATGTGCTGCCCCATGCCTCGGAGCCGCTCAATGCGTCGCCGGAGCCTGCGCCTGCGCCAACCCAGCCGTCGTCTACTCGCCAGTCATCGGATGCCAGCCAGCTATCCCAGTTGCGCCAGCTCCAGTTGTCGCCGGACGTCTCATCCCACAAGCCCTCCCAGGATCCCCATGTGAGCCAGGAGTCGAGTGCACCGGAGGATCGGTCTGCTCCGTCGGTGTCTGCCTCTGCCCACCAGAGCTCATCCAGGAAGGAACCGTCTGCGTTGCCCGCACCATCTACGGAGTCGTCCCACCACCAGTCATCCCAGTTGCCCCAGTCATCCCAGTTGCCCTTGGAGCCCCATGTGCCGCTCCAGTCGCTCCAGTCTACGCCTCAGCTGCCCCAGCCTGTGTCCCAGGAGCTGTATGCTCTGCTGGa/gcCTCCCa | ||||
| Amino_acid_change | AYAPAPLPAYAPAPLPAPVFAAPAPAPVFAAPFAAPPAPVIAAQPALGCAAPCLGAAQCVAGACACANPAVVYSPVIGCQPAIPVAPAPVVAGRLIPQALPGSPCEPGVECTGGSVCSVGVCLCPPELIQEGTVCVARTIYGVVPPPVIPVAPVIPVALGAPCAAPVAPVYASAAPACVPGAVCSAG/ASX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
