WormBase Tree Display for Variation: WBVar00094191
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WBVar00094191 | Name | Public_name | ok3113 | ||
---|---|---|---|---|---|
Other_name | Y54G2A.17b.1:c.717+46_717+280del | ||||
Y54G2A.17a.1:c.657+46_657+280del | |||||
Y54G2A.17a.2:c.657+46_657+280del | |||||
Y54G2A.17a.3:c.657+46_657+280del | |||||
HGVSg | CHROMOSOME_IV:g.2881367_2881601del | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | |
Flanking_sequences | aaaacgcaagataatcgcattgtatactca | tgaattcaaagcaaaatcgcccataattga | |||
Mapping_target | Y54G2A | ||||
Type_of_mutation | Deletion | ||||
PCR_product | ok3113_external | ||||
ok3113_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00032968 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00021882 | |||
Transcript | Y54G2A.17a.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.3:c.657+46_657+280del | ||||
Intron_number | 2/7 | ||||
Y54G2A.17b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17b.1:c.717+46_717+280del | ||||
Intron_number | 3/7 | ||||
Y54G2A.17c.1 | VEP_consequence | coding_sequence_variant,3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
cDNA_position | 703-? | ||||
CDS_position | 703-? | ||||
Protein_position | 235-? | ||||
Exon_number | 1/1 | ||||
Y54G2A.17a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.2:c.657+46_657+280del | ||||
Intron_number | 3/8 | ||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G2A.17a.1:c.657+46_657+280del | ||||
Intron_number | 3/8 | ||||
Isolation | Mutagen | EMS | |||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |