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WormBase Tree Display for Variation: WBVar00094191

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Name Class

WBVar00094191NamePublic_nameok3113
Other_nameY54G2A.17b.1:c.717+46_717+280del
Y54G2A.17a.1:c.657+46_657+280del
Y54G2A.17a.2:c.657+46_657+280del
Y54G2A.17a.3:c.657+46_657+280del
HGVSgCHROMOSOME_IV:g.2881367_2881601del
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesaaaacgcaagataatcgcattgtatactcatgaattcaaagcaaaatcgcccataattga
Mapping_targetY54G2A
Type_of_mutationDeletion
PCR_productok3113_external
ok3113_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00032968
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00021882
TranscriptY54G2A.17a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.3:c.657+46_657+280del
Intron_number2/7
Y54G2A.17b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17b.1:c.717+46_717+280del
Intron_number3/7
Y54G2A.17c.1VEP_consequencecoding_sequence_variant,3_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position703-?
CDS_position703-?
Protein_position235-?
Exon_number1/1
Y54G2A.17a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.2:c.657+46_657+280del
Intron_number3/8
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.657+46_657+280del
Intron_number3/8
IsolationMutagenEMS
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele