WormBase Tree Display for Variation: WBVar00094216
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| WBVar00094216 | Name | Public_name | ok3139 | ||
|---|---|---|---|---|---|
| Other_name | W03F8.5a.1:c.1914_2449del | ||||
| CE47338:p.Val639TrpfsTer8 | |||||
| HGVSg | CHROMOSOME_IV:g.5177823_5178358del | ||||
| Sequence_details | SMap | S_parent | Sequence | W03F8 | |
| Flanking_sequences | tcccgttggatgggagaatattcaaattac | atggattcggaccatctggatgtaaaaagt | |||
| Mapping_target | W03F8 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK3139_external | ||||
| OK3139_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037319 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002247 | |||
| Transcript | W03F8.5a.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | W03F8.5a.1:c.1914_2449del | ||||
| HGVSp | CE47338:p.Val639TrpfsTer8 | ||||
| cDNA_position | 1914-2449 | ||||
| CDS_position | 1914-2449 | ||||
| Protein_position | 638-817 | ||||
| Exon_number | 6/12 | ||||
| Codon_change | acTGTAGTGAGACCGGAAGCTGAAGGAGATGGATCATGCTCTGATGCTCCACCATCTGATGATTTCTTGATTGCAAGAATCTATCCAGGATCTAGATATATTGAAGTTCAACCGGCTATCTGTCTTGAAGCAGGTGTACAATATGAATTGAGAATTCAGTTTAATGAGAAACGAGGCAATTCTCATCCCCAAGAACGTGCTGCTGCAAACATCCTTATCGATTCGATCCTCTTGGCTCCACCAACCTCTGAACTTCATATTTTCCAAGGATCCGCTAGAGCTGAACAACATTTGACCGAATACAATCGTTATCAATGTAGACATCTTGCTCTTTCACTTTCACTATTCAAGGATCAAAGAAACGAAGTTTGTGAGAGATATGTGTGCCCAATTGCTGCAGCTCTTCTAAACAAGACAAGTGAATGTAATTGTGATGCAACTGGTTCTGTATCAGGAATCTGTAATGTTCAAGGAGGACAATGTGAGTGTAAACCAAATGTTGTTGGAAGAAGATGTGATCAATGTGCAATCGGAACATat/acat | ||||
| Amino_acid_change | TVVRPEAEGDGSCSDAPPSDDFLIARIYPGSRYIEVQPAICLEAGVQYELRIQFNEKRGNSHPQERAAANILIDSILLAPPTSELHIFQGSARAEQHLTEYNRYQCRHLALSLSLFKDQRNEVCERYVCPIAAALLNKTSECNCDATGSVSGICNVQGGQCECKPNVVGRRCDQCAIGTY/TX | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
