WormBase Tree Display for Variation: WBVar00094240
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| WBVar00094240 | Name | Public_name | ok3167 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | Y73E7A.7a.2:c.940_975-236delinsGTCGATGACT | ||||||
| Y73E7A.7a.1:c.940_975-236delinsGTCGATGACT | |||||||
| Y73E7A.7b.1:c.445_480-236delinsGTCGATGACT | |||||||
| HGVSg | CHROMOSOME_I:g.1621939_1622434delinsAGTCATCGAC | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y73E7A | |||
| Flanking_sequences | tttttttcaaaaatcaataaaagtcatcga | aatcattttatatcgtgcaatttgtgtcgg | |||||
| Mapping_target | Y73E7A | ||||||
| Type_of_mutation | Insertion | AGTCATCGAC | |||||
| Deletion | |||||||
| PCR_product | ok3167_external | ||||||
| ok3167_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00033007 | ||||||
| Laboratory | RB | ||||||
| Person | WBPerson46 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00000269 | |||||
| Transcript | Y73E7A.7a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y73E7A.7a.1:c.940_975-236delinsGTCGATGACT | ||||||
| cDNA_position | 1038-? | ||||||
| CDS_position | 940-? | ||||||
| Protein_position | 314-? | ||||||
| Intron_number | 7/8 | ||||||
| Exon_number | 7/9 | ||||||
| Y73E7A.7b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y73E7A.7b.1:c.445_480-236delinsGTCGATGACT | ||||||
| cDNA_position | 456-? | ||||||
| CDS_position | 445-? | ||||||
| Protein_position | 149-? | ||||||
| Intron_number | 4/5 | ||||||
| Exon_number | 4/6 | ||||||
| Y73E7A.7a.2 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | Y73E7A.7a.2:c.940_975-236delinsGTCGATGACT | ||||||
| cDNA_position | 974-? | ||||||
| CDS_position | 940-? | ||||||
| Protein_position | 314-? | ||||||
| Intron_number | 6/7 | ||||||
| Exon_number | 6/8 | ||||||
| Isolation | Mutagen | EMS | |||||
| Description | Phenotype | WBPhenotype:0001524 | Paper_evidence | WBPaper00051118 | |||
| Curator_confirmed | WBPerson38423 | ||||||
| Remark | Lethargus duration decreased by 88%; total sleep decreased by 96%; Bout duration decreased by 53% (Table 2A) | Paper_evidence | WBPaper00051118 | ||||
| Curator_confirmed | WBPerson38423 | ||||||
| Reference | WBPaper00051118 | ||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
