WormBase Tree Display for Variation: WBVar00094265
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| WBVar00094265 | Name | Public_name | ok3197 | ||
|---|---|---|---|---|---|
| Other_name | CE18723:p.Cys392Ter | ||||
| F52B11.3.1:c.1176_1981del | |||||
| HGVSg | CHROMOSOME_IV:g.14095164_14095969del | ||||
| Sequence_details | SMap | S_parent | Sequence | F52B11 | |
| Flanking_sequences | tgaatcccaattcggaggaatggctctctg | aggagaagctttcggctatcattcgagtat | |||
| Mapping_target | F52B11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK3197_external | ||||
| OK3197_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037396 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009926 | |||
| Transcript | F52B11.3.1 | VEP_consequence | stop_gained,frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F52B11.3.1:c.1176_1981del | ||||
| HGVSp | CE18723:p.Cys392Ter | ||||
| cDNA_position | 1191-1996 | ||||
| CDS_position | 1176-1981 | ||||
| Protein_position | 392-661 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | tgTACCAACGAGGGAATCCGCTTCATCGTCAACACCAAGGAGCCATACACCGGAGCCATCTACGCTGCTGAGAGATTCTCGACATGCTCCCAAGTCGTCGAGAACGCTAAGCAAATCTCGATCACTTTCCCACCACCAACTGTTTCTTCCGATTGTGGAACTGTTATTCGTGACGGAAAGATGGAAGCTCTCGTTGTTGTTTCTTTGGATGGAGTACTTCCACATCAAGTCACCACTGAGTGGGATCGTTTCTACCGTGTCTCTTGTGATGTTTCTATGGATAAGATGGTCAAGGAAGGATCAGTTGTTGTCACCACAATCTATGAGGCTTCTTCTCAGAACACAACAGTCTTGGATGTTGCTACTCCACCACCAGTCTCTGCTGAACTTCAGATCCTTAACCAACTTGAGGAGCCACTTCACAAGGCCTCTATCGGAGATCCACTTCTCTTGGTTATCACTTCCGAGCAAGCTGGACCACACAACATGATGGTGACAGAGTGCACTGCTACTCGTGTCGGAGGATTCGGAGATACTGTTCCATTCACTCTTATCGAGAACGGATGCCCAAGGTACCCAGCTCTTGTCGGACCAGTCGAGCAAGACTTTGACAAGAACCGTCTGAAGTCTGATCTTCGTGCCTTCCGATTGGATGGATCCTACGATGTGCAAATTGTGTGCTCAATCATGTTCTGTGCCGGACCAAATGGATGCCCAGTGTCGAACTGCCTTGATTCAGGAACCAATGAGTTGTTCATGTCCCATGGAAGAAAGAAGAGATCCGCTGATTTAGAAGCTGGAGAGACCGag/tgag | ||||
| Amino_acid_change | CTNEGIRFIVNTKEPYTGAIYAAERFSTCSQVVENAKQISITFPPPTVSSDCGTVIRDGKMEALVVVSLDGVLPHQVTTEWDRFYRVSCDVSMDKMVKEGSVVVTTIYEASSQNTTVLDVATPPPVSAELQILNQLEEPLHKASIGDPLLLVITSEQAGPHNMMVTECTATRVGGFGDTVPFTLIENGCPRYPALVGPVEQDFDKNRLKSDLRAFRLDGSYDVQIVCSIMFCAGPNGCPVSNCLDSGTNELFMSHGRKKRSADLEAGETE/* | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
