WormBase Tree Display for Variation: WBVar00094290
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| WBVar00094290 | Evidence | Person_evidence | WBPerson11112 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok3226 | |||
| Other_name | R09B5.3a.2:c.2_*126del | ||||
| HGVSg | CHROMOSOME_V:g.1449665_1450173del | ||||
| Sequence_details | SMap | S_parent | Sequence | R09B5 | |
| Flanking_sequences | ccaatttgaattataactcttgtaactctt | tttttgatttgaaactgatttacaaaccgt | |||
| Mapping_target | R09B5 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00033049 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| WBPerson11112 | |||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000556 | |||
| Transcript | R09B5.3a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,stop_lost,start_lost,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R09B5.3a.2:c.2_*126del | ||||
| cDNA_position | 7-350 | ||||
| CDS_position | 2-? | ||||
| Protein_position | 1-? | ||||
| Intron_number | 2/3 | ||||
| Exon_number | 2-4/4 | ||||
| R09B5.3a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 11-? | ||||
| CDS_position | 2-? | ||||
| Protein_position | 1-? | ||||
| Intron_number | 2/3 | ||||
| Exon_number | 2-4/4 | ||||
| R09B5.3b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 2-? | ||||
| CDS_position | 2-? | ||||
| Protein_position | 1-? | ||||
| Intron_number | 1/2 | ||||
| Exon_number | 1-3/3 | ||||
| Remark | Allele sequenced by Ellen Tarr | Curator_confirmed | WBPerson2970 | ||
| Method | KO_consortium_allele |
