WormBase Tree Display for Variation: WBVar00094296
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| WBVar00094296 | Name | Public_name | ok3233 | ||
|---|---|---|---|---|---|
| Other_name | Y52B11A.2b.1:c.*7_*357+106delinsTTGTTTTAGGATCTA | ||||
| Y52B11A.2a.1:c.307_657+106delinsTTGTTTTAGGATCTA | |||||
| HGVSg | CHROMOSOME_I:g.10968040_10968714delinsTAGATCCTAAAACAA | ||||
| Sequence_details | SMap | S_parent | Sequence | Y52B11A | |
| Flanking_sequences | actaatagaaaattcaaaaattgggtgaga | aagatcctaaaactattttaaacttctttt | |||
| Mapping_target | Y52B11A | ||||
| Type_of_mutation | Insertion | TAGATCCTAAAACAA | |||
| Deletion | |||||
| PCR_product | ok3233_external | ||||
| ok3233_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037373 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013122 | |||
| Transcript | Y52B11A.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y52B11A.2a.1:c.307_657+106delinsTTGTTTTAGGATCTA | ||||
| cDNA_position | 318-? | ||||
| CDS_position | 307-? | ||||
| Protein_position | 103-? | ||||
| Intron_number | 4-5/6 | ||||
| Exon_number | 4-5/7 | ||||
| Y52B11A.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y52B11A.2b.1:c.*7_*357+106delinsTTGTTTTAGGATCTA | ||||
| cDNA_position | 324-? | ||||
| Intron_number | 5-6/6 | ||||
| Exon_number | 5-6/7 | ||||
| Isolation | Mutagen | EMS | |||
| Description | Phenotype | WBPhenotype:0000061 | Paper_evidence | WBPaper00050240 | |
| Curator_confirmed | WBPerson19150 | ||||
| WBPerson35314 | |||||
| WBPhenotype:0000154 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson35314 | ||||
| WBPhenotype:0000295 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson19150 | ||||
| WBPhenotype:0000848 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson19150 | ||||
| WBPerson35314 | |||||
| WBPhenotype:0001183 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson35314 | ||||
| WBPhenotype:0001384 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson19150 | ||||
| WBPhenotype:0001663 | Paper_evidence | WBPaper00050240 | |||
| Curator_confirmed | WBPerson19150 | ||||
| Reference | WBPaper00050240 | ||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
