WormBase Tree Display for Variation: WBVar00094307
expand all nodes | collapse all nodes | view schema
| WBVar00094307 | Name | Public_name | ok3251 | ||
|---|---|---|---|---|---|
| Other_name | F54F11.2a.1:c.2789_3260del | ||||
| F54F11.2b.1:c.2402_2873del | |||||
| CE11095:p.Ser930ThrfsTer33 | |||||
| CE43217:p.Ser801ThrfsTer33 | |||||
| HGVSg | CHROMOSOME_II:g.13513417_13513888del | ||||
| Sequence_details | SMap | S_parent | Sequence | F54F11 | |
| Flanking_sequences | aggatccaacttaccagaccactatcaata | ctatgagcagaacattgcagtcaagtacag | |||
| Mapping_target | F54F11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok3251_external | ||||
| ok3251_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037459 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010070 | |||
| Transcript | F54F11.2b.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F54F11.2b.1:c.2402_2873del | ||||
| HGVSp | CE43217:p.Ser801ThrfsTer33 | ||||
| cDNA_position | 2402-2873 | ||||
| CDS_position | 2402-2873 | ||||
| Protein_position | 801-958 | ||||
| Exon_number | 8/11 | ||||
| Codon_change | aGTAGCCCGGCTTTGAAGAAGGAGAAGCAGCTGTACAACGCGTGTCTTACAGCCACCGCCAGCTCTCAGAGCGAGGATCAAATCCTCATTTCGAAGAATTATATTCAAACTAAAGTAGATGATCTCAAGACACTTATTGGTCAAGACTTCACACTTGTCAATGGAGGAGCACCAAAACTTCCATCCGCTAAACAAATCGGAGATGCCCTAGGATACCTCTCATTCGAACAAGGTATTGATACTCTGATCAGCCCACTTGTCGACACCTACTGGATTGATAACAGTAAGGGATATCAGATGTTCATCGATCAGAACACCGCTTATCTGTCAAAGACCTATTACCAACCAGCTGCATGGAAGATTGAGAAGCCGAAGTACTTGAAGATGGCTCTGGATGTTGTCACAAGATACGCCAGGGAGCAAAATATCACTTTACCAGCTGGAGCAAGTGATCTTCTCTCCAATGTTTTGGAc/ac | ||||
| Amino_acid_change | SSPALKKEKQLYNACLTATASSQSEDQILISKNYIQTKVDDLKTLIGQDFTLVNGGAPKLPSAKQIGDALGYLSFEQGIDTLISPLVDTYWIDNSKGYQMFIDQNTAYLSKTYYQPAAWKIEKPKYLKMALDVVTRYAREQNITLPAGASDLLSNVLD/X | ||||
| F54F11.2a.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F54F11.2a.1:c.2789_3260del | ||||
| HGVSp | CE11095:p.Ser930ThrfsTer33 | ||||
| cDNA_position | 2801-3272 | ||||
| CDS_position | 2789-3260 | ||||
| Protein_position | 930-1087 | ||||
| Exon_number | 12/16 | ||||
| Codon_change | aGTAGCCCGGCTTTGAAGAAGGAGAAGCAGCTGTACAACGCGTGTCTTACAGCCACCGCCAGCTCTCAGAGCGAGGATCAAATCCTCATTTCGAAGAATTATATTCAAACTAAAGTAGATGATCTCAAGACACTTATTGGTCAAGACTTCACACTTGTCAATGGAGGAGCACCAAAACTTCCATCCGCTAAACAAATCGGAGATGCCCTAGGATACCTCTCATTCGAACAAGGTATTGATACTCTGATCAGCCCACTTGTCGACACCTACTGGATTGATAACAGTAAGGGATATCAGATGTTCATCGATCAGAACACCGCTTATCTGTCAAAGACCTATTACCAACCAGCTGCATGGAAGATTGAGAAGCCGAAGTACTTGAAGATGGCTCTGGATGTTGTCACAAGATACGCCAGGGAGCAAAATATCACTTTACCAGCTGGAGCAAGTGATCTTCTCTCCAATGTTTTGGAc/ac | ||||
| Amino_acid_change | SSPALKKEKQLYNACLTATASSQSEDQILISKNYIQTKVDDLKTLIGQDFTLVNGGAPKLPSAKQIGDALGYLSFEQGIDTLISPLVDTYWIDNSKGYQMFIDQNTAYLSKTYYQPAAWKIEKPKYLKMALDVVTRYAREQNITLPAGASDLLSNVLD/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
