WormBase Tree Display for Variation: WBVar00094392
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| WBVar00094392 | Name | Public_name | ok3370 | ||
|---|---|---|---|---|---|
| Other_name | CE43083:p.Thr223LeufsTer40 | ||||
| F57F5.1.1:c.666_1002del | |||||
| HGVSg | CHROMOSOME_V:g.12003991_12004327del | ||||
| Sequence_details | SMap | S_parent | Sequence | F57F5 | |
| Flanking_sequences | ttacaagccatgcccatccaacatgtaccc | gttaacgagtgcggaattgagggaggagtc | |||
| Mapping_target | F57F5 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok3370_external | ||||
| ok3370_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037484 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010204 | |||
| Transcript | F57F5.1.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F57F5.1.1:c.666_1002del | ||||
| HGVSp | CE43083:p.Thr223LeufsTer40 | ||||
| cDNA_position | 787-1123 | ||||
| CDS_position | 666-1002 | ||||
| Protein_position | 222-334 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | ccAACTGACAAATGCGAACGCTCTTGCCAAGCTGGATATGCTCTCACCTACCAACAAGATCTTCACTTCGGACAATCTGCATACGCCGTCTCAAAGAAGGCTGCTGAAATCCAAAAGGAAATCATGACTCATGGTCCAGTTGAGGTTGCATTCACTGTCTACGAAGATTTTGAGCATTACTCCGGAGGAGTCTACGTTCATACCGCTGGAGCCAGTCTTGGAGGACATGCCGTAAAGATGCTCGGATGGGGAGTTGATAATGGAACACCATATTGGCTCTGTGCCAACTCATGGAATGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGA/cc | ||||
| Amino_acid_change | PTDKCERSCQAGYALTYQQDLHFGQSAYAVSKKAAEIQKEIMTHGPVEVAFTVYEDFEHYSGGVYVHTAGASLGGHAVKMLGWGVDNGTPYWLCANSWNEDWGENGYFRIIRG/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
