WormBase Tree Display for Variation: WBVar00094567
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| WBVar00094567 | Name | Public_name | ok3607 | ||
|---|---|---|---|---|---|
| Other_name | CE29550:p.Pro164AsnfsTer26 | ||||
| B0495.7.1:c.490_1286del | |||||
| HGVSg | CHROMOSOME_II:g.7703846_7704642del | ||||
| Sequence_details | SMap | S_parent | Sequence | B0495 | |
| Flanking_sequences | gcaatgataagaagcattgtaattaccatt | tcccttcttcggaccaattctcacaacgac | |||
| Mapping_target | B0495 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok3607_external | ||||
| ok3607_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037519 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015206 | |||
| Transcript | B0495.7.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | B0495.7.1:c.490_1286del | ||||
| HGVSp | CE29550:p.Pro164AsnfsTer26 | ||||
| cDNA_position | 493-1289 | ||||
| CDS_position | 490-1286 | ||||
| Protein_position | 164-429 | ||||
| Exon_number | 4/9 | ||||
| Codon_change | CCATCTGGAAATTCTTTGCTTCTCAATTGTCATTTCGATACGATGCCAGATACTCCAGGTGCCACTGATGATGCAGTTGCTTGCACAATTATGATGGATGTACTCGAAGTTTTGGCTCATTCCAAAACTGAACTTGAAAATGATGTAGTATTCCTGTTCAATGGTGCTGAAGAGAACTTTCTACAAGCTGCTCATGGATTCATTAATCAACATCCTTGGCGTCATGACATTCGAGCCTTCATTAATTTGGAAGGTACTGGATCTGGAGGTCGTGAAATTCTATTCCAAGCAGGGCCAGGAAACTCGTGGCTTCTTCAAACATACTTGGAAAATGCGCCACACCCATTCTGCTCCGTTCTTGCTCAAGAAATTTTCCAATCCGGAATAATCCCATCTGACACAGACTTCCGTATTTTCCGGGATTACGGTCGTATCTCTGGACTCGATATCGCATATACTAAAAATGGATGGTTCTATCACACAGAATTCGACGAGGAATGGCGTATTGAACCTGGAGCAATTCAAAGAGCTGGTGAAAATGTTCTTGCAGTTGTACGAGCAATTCTCAAATCTCCATATCTTGAAAAACCAGCAACATTTGATGAAGAAAACAGATGGGTTTTCTATGATGTCGTCGGACTTTTCACTGTATACTACAGTGTTAATGTTGGAAAACTTCTAAACTACATTGCATGCTTTGCAACATACTTCCTAGTTGTTCTTCGCATCAGAAATCGATTATATTCAGTTGGAGATTTGGCTATCGCATTCAAACATCATGTTGTGGCATTCCTTGCa/a | ||||
| Amino_acid_change | PSGNSLLLNCHFDTMPDTPGATDDAVACTIMMDVLEVLAHSKTELENDVVFLFNGAEENFLQAAHGFINQHPWRHDIRAFINLEGTGSGGREILFQAGPGNSWLLQTYLENAPHPFCSVLAQEIFQSGIIPSDTDFRIFRDYGRISGLDIAYTKNGWFYHTEFDEEWRIEPGAIQRAGENVLAVVRAILKSPYLEKPATFDEENRWVFYDVVGLFTVYYSVNVGKLLNYIACFATYFLVVLRIRNRLYSVGDLAIAFKHHVVAFLA/X | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
