WormBase Tree Display for Variation: WBVar00094713
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| WBVar00094713 | Name | Public_name | or302 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Sequence_details | Mapping_target | C27A2 | |||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Pending_curation | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00008501 | ||||||||
| WBStrain00008507 | |||||||||
| WBStrain00008508 | |||||||||
| WBStrain00028756 | |||||||||
| Laboratory | EU | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00001102 | |||||||
| Interactor | WBInteraction000009114 | ||||||||
| WBInteraction000502822 | |||||||||
| WBInteraction000502824 | |||||||||
| WBInteraction000503950 | |||||||||
| WBInteraction000503952 | |||||||||
| Genetics | Mapping_data | In_multi_point | 4269 | ||||||
| Description | Phenotype | WBPhenotype:0000154 | Paper_evidence | WBPaper00025200 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "Many dsh-2(ez25) hermaphrodites are fertile, but they produce only 5-10 embryos each. dsh-2(or302) animals are slightly less fertile than dsh-2(ez25)." | Paper_evidence | WBPaper00025200 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0002207 | Paper_evidence | WBPaper00025200 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "We also obtained a second dsh-2 allelle, dsh-2(or302), a deletion allele generated by G. Ellis and B. Bowerman (personal communication) and found that it has a similar gonadal phenotype (Table 1)... 34% of dsh-2(ez25) and 43% of dsh-2(or302) hermaphrodites are missing both gonadal arms and 46% of dsh-2(ez25) and 43% of dsh-2(or302) mutants lack one gonadal arm (Fig. 1B,C, Table 1)." | Paper_evidence | WBPaper00025200 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Penetrance | Incomplete | 86 | Paper_evidence | WBPaper00025200 | |||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005178 | PATO:0000460 | Paper_evidence | WBPaper00025200 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Reference | WBPaper00025200 | ||||||||
| WBPaper00018988 | |||||||||
| WBPaper00025607 | |||||||||
| WBPaper00028061 | |||||||||
| Remark | This deletion starts 458bp downstream of the start codon and finishes in exon 6 | Paper_evidence | WBPaper00026633 | ||||||
| Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00001102 Genomic_neighbourhood | Paper_evidence | WBPaper00026633 | |||||||
| Method | Deletion_allele |
