WormBase Tree Display for Variation: WBVar00096903
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| WBVar00096903 | Name | Public_name | WBVar00096903 | ||
|---|---|---|---|---|---|
| Other_name | pas1762 | ||||
| F53A3.4d.1:c.1236T>C | |||||
| F53A3.4d.3:c.1236T>C | |||||
| F53A3.4d.2:c.1236T>C | |||||
| CE44055:p.Ala2034= | |||||
| CE44019:p.Ala1999= | |||||
| F53A3.4b.1:c.6102T>C | |||||
| F53A3.4a.1:c.5997T>C | |||||
| CE48496:p.Ala412= | |||||
| HGVSg | CHROMOSOME_III:g.1939282T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F53A3 | |
| Flanking_sequences | gaaaaaaaatttttttacaaattttctttttttgcagaaccaacaactcgcagccgcccaagcagccgccgcagctgcagcagccggccgtccaactcaaaatcaatacgaagcactgctccagcaacaacgactgctcgccgctcaacaacaagccgccgccggcgccagtgctcagcaacaggccgccgcagcagccgcccaggctcaagctcaacaattccagcagcaactgctcggtctacagccaaatttgctcctggcccaagtccagcaggctcaacaggcccaggctcaggc | caggcccaggcccagcaaaagccgccgcaaatgccgaatggacgatgattcgattttatcgattttttttttgatttttttcttgtgttcccggttcgctgacctcttagtttttcaccatttttctctctgaaaatctcatttttccgcccaaagatcctcttgatttatcgatttatcgattttttttttgccccaatttctcatcgacacgccccatttttcttgtttttttttcaatcacaaacatttcctgattaattatgatgaagaatttatcgattttatacatatattttg | |||
| Mapping_target | F53A3 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00004128 | |||
| Transcript | F53A3.4d.2 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.4d.2:c.1236T>C | ||||
| HGVSp | CE48496:p.Ala412= | ||||
| cDNA_position | 2913 | ||||
| CDS_position | 1236 | ||||
| Protein_position | 412 | ||||
| Exon_number | 10/11 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| F53A3.4d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.4d.1:c.1236T>C | ||||
| HGVSp | CE48496:p.Ala412= | ||||
| cDNA_position | 3237 | ||||
| CDS_position | 1236 | ||||
| Protein_position | 412 | ||||
| Exon_number | 11/12 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| F53A3.4b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.4b.1:c.6102T>C | ||||
| HGVSp | CE44055:p.Ala2034= | ||||
| cDNA_position | 6102 | ||||
| CDS_position | 6102 | ||||
| Protein_position | 2034 | ||||
| Exon_number | 23/24 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| F53A3.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.4a.1:c.5997T>C | ||||
| HGVSp | CE44019:p.Ala1999= | ||||
| cDNA_position | 6006 | ||||
| CDS_position | 5997 | ||||
| Protein_position | 1999 | ||||
| Exon_number | 23/24 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| F53A3.4d.3 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.4d.3:c.1236T>C | ||||
| HGVSp | CE48496:p.Ala412= | ||||
| cDNA_position | 2858 | ||||
| CDS_position | 1236 | ||||
| Protein_position | 412 | ||||
| Exon_number | 10/11 | ||||
| Codon_change | gcT/gcC | ||||
| Amino_acid_change | A | ||||
| Method | WGS_Pasadena_Quinlan |
