WormBase Tree Display for Variation: WBVar00099969
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| WBVar00099969 | Name | Public_name | WBVar00099969 | ||
|---|---|---|---|---|---|
| Other_name | pas4828 | ||||
| cewivar00108165 | |||||
| C04D8.1d.1:c.*29C>T | |||||
| C04D8.1b.1:c.*29C>T | |||||
| C04D8.1g.1:c.*29C>T | |||||
| C04D8.1a.1:c.*29C>T | |||||
| C04D8.1f.1:c.*160C>T | |||||
| HGVSg | CHROMOSOME_III:g.8518434C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | ZC21 | |
| Flanking_sequences | ttaaaaatttataattaattaggtgattccaaatttttcgttcatcggaaaacacaaatcatcgttcataagttttccaggaaggccgccttgacaagcttgcgcgctggttcggaatcaggaaatctagcccagacgtgagccgtgatgaggtgtcagacgatgaaaagaaccatcaagaagcgcctcctctacctgctgcagcaccaccagttattgttcgaacttcaccaaacgagttgacaccggtgtctggcgatgaactgctttaatcgtttttctcttgattctttccttccc | accttaaaacatgtctcttcatctttctctcacacacttatgatctacgggttcccatcatcccccaattatattcacaaaacttttcagagctgtctctgaaagtcaccacctcttacgaacttgtgatttcttcggtttctttgaaatttaaagaattcccctttttttgtttctagtgagatctccttcagaaaaatcttaaacatatatttttctattattgttaatcctttccatttccatgttcaaccccttttccttcattttcttcagaatatcatcctttcgtacctccgg | |||
| Mapping_target | ZC21 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015418 | |||
| Transcript | C04D8.1a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04D8.1a.1:c.*29C>T | ||||
| cDNA_position | 4847 | ||||
| Exon_number | 20/20 | ||||
| C04D8.1d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04D8.1d.1:c.*29C>T | ||||
| cDNA_position | 3446 | ||||
| Exon_number | 12/12 | ||||
| C04D8.1f.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04D8.1f.1:c.*160C>T | ||||
| cDNA_position | 4954 | ||||
| Exon_number | 21/21 | ||||
| C04D8.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04D8.1b.1:c.*29C>T | ||||
| cDNA_position | 4936 | ||||
| Exon_number | 21/21 | ||||
| C04D8.1g.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04D8.1g.1:c.*29C>T | ||||
| cDNA_position | 3906 | ||||
| Exon_number | 15/15 | ||||
| Method | WGS_Pasadena_Quinlan |
