WormBase Tree Display for Variation: WBVar00109160
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| WBVar00109160 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00109160 | ||||
| Other_name | cbs44681 | |||||
| HGVSg | chrII:g.5049497C>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | agtagcgcaggtcttttctgggaagttgtctgtctttggttgaacgtagt | gatttgcacttgaaccttctttccatgaattctcttacgaaggaattcgc | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | C | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 549 451 | ||
| AGCT | AluI | 325 228 170 107 106 53 11 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 470 357 100 73 | ||||
| GGATCC | BamHI | 897 78 25 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 895 78 27 | ||||
| TCGCGA | Bsp68I, NruI | 549 451 | ||||
| RGCY | CviJI, CviTI | 188 170 145 137 77 74 51 44 31 30 22 11 11 9 | ||||
| GAATTC | EcoRI, FunII | 457 409 118 16 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 377 284 216 123 | ||||
| CAC | HindI | 111 100 83 75 73 65 59 51 42 40 38 35 30 22 22 22 20 19 16 16 13 11 11 10 5 5 2 2 2 | ||||
| AAGCTT | HindIII | 657 172 171 | ||||
| GANTC | HinfI | 537 128 109 84 60 43 39 | ||||
| TCNNGA | Hpy178III, Hpy188III | 374 200 141 110 67 64 35 9 | ||||
| TCNGA | Hpy188I | 381 216 90 81 62 58 51 45 16 | ||||
| GTNNAC | Hpy8I | 583 266 111 40 | ||||
| CGWCG | Hpy99I | 763 127 110 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 486 258 235 21 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 412 409 118 45 16 | ||||
| GAWTC | TfiI | 646 212 99 43 | ||||
| Polymorphic_strain_digest | CGCG | AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI | 1000 | |||
| AGCT | AluI | 325 228 213 170 53 11 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 827 100 73 | ||||
| GGATCC | BamHI | 975 25 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 973 27 | ||||
| TCGCGA | Bsp68I, NruI | 1000 | ||||
| RGCY | CviJI, CviTI | 188 170 145 139 137 74 44 31 30 22 11 9 | ||||
| GAATTC | EcoRI, FunII | 473 409 118 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 593 284 123 | ||||
| CAC | HindI | 111 100 83 75 73 59 57 51 42 40 38 35 30 22 22 22 20 19 16 16 13 11 11 10 8 5 5 2 2 2 | ||||
| AAGCTT | HindIII | 828 172 | ||||
| GANTC | HinfI | 333 204 128 109 84 60 43 39 | ||||
| TCNNGA | Hpy178III, Hpy188III | 574 141 110 67 64 35 9 | ||||
| TCNGA | Hpy188I | 343 216 90 81 62 58 51 45 38 16 | ||||
| GTNNAC | Hpy8I | 849 111 40 | ||||
| CGWCG | Hpy99I | 404 359 127 110 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 486 258 188 47 21 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 457 409 118 16 | ||||
| GAWTC | TfiI | 333 313 212 99 43 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00027000 | ||||
| Transcript | CBG04292.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG04292.1:c.1261G>C | |||||
| HGVSp | CBP01117.1:p.Asp421His | |||||
| cDNA_position | 1288 | |||||
| CDS_position | 1261 | |||||
| Protein_position | 421 | |||||
| Exon_number | 3/6 | |||||
| Codon_change | Gac/Cac | |||||
| Amino_acid_change | D/H | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
