WormBase Tree Display for Variation: WBVar00109172

WBVar00109172 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00109172
    Other_name: cbs44693
    HGVSg: chrII:g.5091919G>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: cgttcgcggcgatgttccactggaaaaaggtgggttttgggttttttttc ccaaattgagcctcatggaacattctggcttaaaattcaaccttcgcgca
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RGCY CviJI, CviTI 233 169 105 101 99 96 73 72 34 18
        CAC HindI 112 107 91 89 76 74 72 62 38 37 34 32 30 25 22 17 16 16 16 13 12 7 2
        TTAA MseI, Tru1I, Tru9I 530 321 121 28
        AATT Sse9I, TasI, Tsp509I, TspEI 180 146 142 123 107 86 61 50 31 30 23 21
      Polymorphic_strain_digest: RGCY CviJI, CviTI 233 169 105 101 99 96 73 72 33 19
        CAC HindI 107 89 85 76 74 72 62 47 44 38 37 34 32 30 27 25 22 17 16 16 16 13 12 7 2
        TTAA MseI, Tru1I, Tru9I 558 321 121
        AATT Sse9I, TasI, Tsp509I, TspEI 180 153 146 142 107 86 61 50 31 23 21
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027008
    Transcript: CBG04305.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04305.1:c.808-32C>G
        Intron_number: 4/8
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP