WormBase Tree Display for Variation: WBVar00110645
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WBVar00110645 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00110645 | ||||
Other_name | cbs46166 | |||||
cb46166 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrIV:g.6699592A>C | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0110 | ||
Flanking_sequences | caaatttttatatgtatgcacatat | tcctttcacaatgaacagatttcta | ||||
Mapping_target | cb25.fpc0110 | |||||
Type_of_mutation | Substitution | T | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 524 163 114 100 90 9 | ||
GTAC | AfaI, Csp6I, RsaI | 708 257 35 | ||||
CATATG | FauNDI, NdeI | 1000 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 231 163 158 114 100 86 78 38 12 11 9 | ||||
WGTACW | TatI | 745 255 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 375 163 149 114 100 90 9 | |||
GTAC | AfaI, Csp6I, RsaI | 708 292 | ||||
CATATG | FauNDI, NdeI | 504 496 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 163 158 149 114 100 86 82 78 38 12 11 9 | ||||
WGTACW | TatI | 1000 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00027947 | ||||
Transcript | CBG05508a.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508a.1:c.*120T>G | |||||
cDNA_position | 7979 | |||||
Exon_number | 29/29 | |||||
CBG05508b.1 | VEP_consequence | 3_prime_UTR_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG05508b.1:c.*120T>G | |||||
cDNA_position | 5622 | |||||
Exon_number | 27/27 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |