WormBase Tree Display for Variation: WBVar00115181
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| WBVar00115181 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00115181 | ||||
| Other_name | cbs50702 | |||||
| HGVSg | chrIII:g.8365812G>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2234 | ||
| Flanking_sequences | ttcatgcatcttattgggaatcatgcgacgtggcttctttccttcttcga | aattcgttcgaggagaggagtgtgtgatgcccacactttcttcgagtatg | ||||
| Mapping_target | cb25.fpc2234 | |||||
| Type_of_mutation | Substitution | C | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 575 238 87 63 37 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 841 159 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 703 297 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 841 159 | ||||
| CAC | HindI | 175 112 109 101 96 53 49 47 47 41 39 29 18 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 350 140 137 116 86 69 60 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 501 202 97 84 67 49 | ||||
| GAWTC | TfiI | 529 140 116 86 69 60 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 418 238 157 87 63 37 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 582 259 159 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 747 253 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 499 297 204 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 582 259 159 | ||||
| CAC | HindI | 175 109 101 96 62 53 50 49 47 47 41 39 29 18 17 13 12 12 7 7 5 3 2 2 2 2 | ||||
| GANTC | HinfI | 350 223 140 116 69 60 42 | ||||
| TCNNGA | Hpy178III, Hpy188III | 550 202 97 84 67 | ||||
| GAWTC | TfiI | 615 140 116 69 60 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00031280 | ||||
| WBGene00031281 | ||||||
| Transcript | CBG09750.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09750.1:c.*1983G>T | |||||
| cDNA_position | 2432 | |||||
| Exon_number | 9/18 | |||||
| CBG09750.2 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG09750.2:c.*1983G>T | |||||
| cDNA_position | 2432 | |||||
| Exon_number | 9/17 | |||||
| CBG09751.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG09751.1:c.2101C>A | |||||
| HGVSp | CBP48050.1:p.Gln701Lys | |||||
| cDNA_position | 2101 | |||||
| CDS_position | 2101 | |||||
| Protein_position | 701 | |||||
| Exon_number | 10/13 | |||||
| Codon_change | Caa/Aaa | |||||
| Amino_acid_change | Q/K | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
