WormBase Tree Display for Variation: WBVar00115182

WBVar00115182 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00115182
    Other_name: cbs50703
    HGVSg: chrIII:g.8365823A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2234
    Flanking_sequences: tcccaatattcttcatgcatcttattgggaatcatgcgacgtggcttctt ccttcttcgacaattcgttcgaggagaggagtgtgtgatgcccacacttt
    Mapping_target: cb25.fpc2234
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 575 227 98 63 37
        GWGCWC Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI 830 170
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 1000
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 714 286
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 830 170
        CAC HindI 164 112 109 101 96 58 53 49 47 41 39 29 18 17 13 12 12 7 7 5 3 2 2 2 2
        GANTC HinfI 339 140 137 127 86 69 60 42
        TCNNGA Hpy178III, Hpy188III 501 191 108 84 67 49
        GAWTC TfiI 518 140 127 86 69 60
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 418 227 157 98 63 37
        GWGCWC Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI 571 259 170
        GAANNNNTTC Asp700I, MroXI, PdmI, XmnI 736 264
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 510 286 204
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 571 259 170
        CAC HindI 17 13 12 12 7 7 5 3 2 2 2 2
        GANTC HinfI 339 223 140 127 69 60 42
        TCNNGA Hpy178III, Hpy188III 550 191 108 84 67
        GAWTC TfiI 604 140 127 69 60
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00031280
      WBGene00031281
    Transcript: CBG09750.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09750.1:c.*1994A>G
        cDNA_position: 2443
        Exon_number: 9/18
      CBG09750.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG09750.2:c.*1994A>G
        cDNA_position: 2443
        Exon_number: 9/17
      CBG09751.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG09751.1:c.2090T>C
        HGVSp: CBP48050.1:p.Phe697Ser
        cDNA_position: 2090
        CDS_position: 2090
        Protein_position: 697
        Exon_number: 10/13
        Codon_change: tTc/tCc
        Amino_acid_change: F/S
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP